AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aary5g02626 ATGAAGGTTCAGTTGACTCGTAATTTAGCCTCATCATTAATTCACCGCTTATCTTCAGTTAGCTCCTTTGGTCGTAATAGTCTTAGTTTAAGTCGGTTTAGGTTTTCCACTGTTGTTAATTCATTGCGAGAGGGTACAAGTATGGGGTCACAAGTGGAGGAGATTGAGTGGCCGGCGAATAAAGTTAGGGATACTTTTATTAAGTTTTTTGAAGAGAGGAATCATGTTTACTGGAAATCGAGCCCTGTCGTTCCGGTTAACGATCCTACGCTTTTGTTCGCTAATGCCGGTATGAATCAATATAAGCCTATCTTCTTGGGTACTGCTGATCCGAACACTTCTTTGAGCAAATTGACTCGTGCTTGCAACACCCAGAAGTGTATCCGAGCCGGAGGCAAACACAATGATCTTGATGATGTTGGCAAAGACACTTATCATCACACTTTCTTTGAAATGCTTGGTAACTGGTCATTTGGTGATTATTTTAAGAAGGAAGCTATTGGATGGGCATGGGAGCTTCTCACAACCGTTTATAAGCTGCCAACTGATCGAATATATGCTACTTATTTTGGCGGTGATGAGAAATTGGGCCTTCCCGCTGATAATGAAGCCAGAGATATATGGCTTCAATATCTCCCACCTGCACGAGTTTTGCCTTTTGGTTGTAAAGATAACTTTTGGGAGATGGGTGATACTGGGCCGTGTGGACCCTGTACTGAAATACACTTTGATAGAATTGGTGGTCGTGATGGTGCACATTTGGTTAACAATGATGACCCCACATTGATTGAAATATGGAATAACGTGTTTATTCAGTTTAACAGGGAAGCTGATGGTTCTTTGAAACCTCTCCCTGCCAAACACGTGGATACCGGAATGGGTTTCGAAAGGTTGACATCAATTCTTCAGGACAAGTTGAGCAACTATGATACTGATGTCTTTCTACCCATTTTTGAAGCTATTCAAAAGGCAACTGGTGCCAGAGCTTATACAGGCAAAGTGGGGCCAGATGACAAGGATGGCATTGACATGGCATACAGAGTTGTTGCTGACCACATCCGAACTCTTTCGTTTGCTATAGCCGATGGCTCTTGTCCAGGCAATGAAGGGCGTGAATATGTTTTACGACGCATTCTTCGCCGTGCAGTACGTTATGGAAGAGAAGTTTTGAAAGCAGAGCAAGGATTTTTCAATGGATTGGTAAAAGTTGTGGTGGATATTATGAGTCATGTCTTTCCTGAGCTAAAGCAACACGAGACGCGCATTAGAGAGATTATAGCTGAAGAGGAAACTAGTTTTGGGCGCACGTTACTTCATGGAATTGAGAAGTTTAAAAGGACGGTTCAAGATACTCAGGGAAAAATTATTAGTGGACAGGATGCATTTGTGTTGTGGGATACTTTTGGGTTTCCATTGGATCTAACTCAGTTAATGGCAGAAGAAAGGCATTTAGTGGTTGATGTTGAGGGTTTTAATCTCGCTATGAGTGAAGCTAGAGAAAGATCAAGGAATGCTCAGAATAAGCAATCTGCTGTTTCGATTGTGATGGATGCAGACGCGACCTCAGCACTACATAAGAGAGGGGTGGCTACAACAAATGATAGTTTCAAATATAATTGGTTTGAGGACCACAAAAGTGTGATAAAAGCCATTTACACGGGTAGTGAGTATGTGGAACGTGCCGAGGCTGGTGTTGATGTGGGTATAATTCTTGAGAGCACAAGTTTCTATGCTGAGCAAGGTGGTCAGATATTTGATACTGGAGTACTTGGAGGCCCCTCTGGATCATTCGAGGTTTCTAATGTTCAAATTTACGGTGGTTTTGTGATTCATCTTGGTCAAGTTACTGGAGAATCTACCAAATTTCATGTTGGCGATGAAGTAATCTGTAAGGTTGATTATGGAAGGCGTCAACGCATCGCTCCCAACCATACCTGTACACACATGTTAAATTTTGCTCTCAGGGAAGTACTTGGGGATCACATCGACCAAAAAGGATCCATTGTTCTCCCAGAAAAATTAAGATTTGACTTTTCCCATGGGAAGCCTGTAAAGCCAGATGATCTTCGCAGAATTGAATCCATTGTAAATGAACAAATTAAAGCTGAATTAGAGGTTTCTGCAAAGGAGGCTAGCCTTGCTGATGCAAAACGAGTAAATGGGTTGCGAGCTGTTTTTGGTGAAGTGTATCCCGATCCAGTTAGAATTGTCTCAATTGGTCGAAAAGTGGATGAACTATTGGCTGATCCTGAAAATAAAGAATGGGCGTCCATATCTTCAGAGCTCTGTGGAGGGACTCACATATCCAATACACGAGAGGCCAGGGCATTTGCACTTTTGTCTGAGGAGGGAATTGCCAAGGGGATCCGAAGAGTTACTGCTGTAACAACAGAATATGCTTTTGAGGCTATTAAAAAAGCAGCTGAACTTGAACAAGAAGTTGAGCAGGCATCAACTCTGGAAGGGAACCTTCTTGAGCAGAAAGTCACCTTTTTAAATGGTCAAGTAGAGTCTGCATATATTCCAACAGCAAAGAAGGCCGATCTTAAGGCAAAAATTTCCATTCTTCAGAATCAAGTAATAAGAAACAAAAAGATGATTGCTCAAGAAAACATCCAGAATGCTGTTGCATCCGTCACTGCAGCAGCAGAAGCTGCCATTGCTGAGGGAAAGGCTTTCTGCATTTCCCATGTTGGTGTAGGATCTGATACTGCTGCTATTCGCGAGGCAGTTGTTAAAGTCATGGAACAAAAGGGTATGGCAGTGATGGTTTTTAGCACTGATGAACAATCAAAGAAGGCCTTGGTTTGTGCTGGTGTGCCTGAGCGAAGCAATCAAAGCAACAACCTGAAGGTTTTAGAGTGGCTGAAGGAGGCATTGAAGCCGCTAGAAGGCAAAGGTGGTGGTGGGAAAGGCGGTCTTGCGCAAGGCCAGGGACCCGTTATAACGCATGTGGACGAGGCAATTGACATCGCCAAGTCATTTGCGTCACTCAAGCTGGGATAA 3006 43.01 MKVQLTRNLASSLIHRLSSVSSFGRNSLSLSRFRFSTVVNSLREGTSMGSQVEEIEWPANKVRDTFIKFFEERNHVYWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTSLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIGWAWELLTTVYKLPTDRIYATYFGGDEKLGLPADNEARDIWLQYLPPARVLPFGCKDNFWEMGDTGPCGPCTEIHFDRIGGRDGAHLVNNDDPTLIEIWNNVFIQFNREADGSLKPLPAKHVDTGMGFERLTSILQDKLSNYDTDVFLPIFEAIQKATGARAYTGKVGPDDKDGIDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGREVLKAEQGFFNGLVKVVVDIMSHVFPELKQHETRIREIIAEEETSFGRTLLHGIEKFKRTVQDTQGKIISGQDAFVLWDTFGFPLDLTQLMAEERHLVVDVEGFNLAMSEARERSRNAQNKQSAVSIVMDADATSALHKRGVATTNDSFKYNWFEDHKSVIKAIYTGSEYVERAEAGVDVGIILESTSFYAEQGGQIFDTGVLGGPSGSFEVSNVQIYGGFVIHLGQVTGESTKFHVGDEVICKVDYGRRQRIAPNHTCTHMLNFALREVLGDHIDQKGSIVLPEKLRFDFSHGKPVKPDDLRRIESIVNEQIKAELEVSAKEASLADAKRVNGLRAVFGEVYPDPVRIVSIGRKVDELLADPENKEWASISSELCGGTHISNTREARAFALLSEEGIAKGIRRVTAVTTEYAFEAIKKAAELEQEVEQASTLEGNLLEQKVTFLNGQVESAYIPTAKKADLKAKISILQNQVIRNKKMIAQENIQNAVASVTAAAEAAIAEGKAFCISHVGVGSDTAAIREAVVKVMEQKGMAVMVFSTDEQSKKALVCAGVPERSNQSNNLKVLEWLKEALKPLEGKGGGGKGGLAQGQGPVITHVDEAIDIAKSFASLKLG 1001
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aary5g02626 1001 Gene3D - 633 809 - -
Aary5g02626 1001 Gene3D - 529 632 - -
Aary5g02626 1001 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 57 806 IPR018165 GO:0003676(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro)
Aary5g02626 1001 Gene3D - 887 996 - -
Aary5g02626 1001 Gene3D Bira Bifunctional Protein; Domain 2 58 306 IPR045864 -
Aary5g02626 1001 SUPERFAMILY ThrRS-AlaRS common domain 632 807 IPR018163 GO:0000166(InterPro)
Aary5g02626 1001 FunFam Alanine--tRNA ligase 888 996 - -
Aary5g02626 1001 SUPERFAMILY Class II aaRS and biotin synthetases 58 309 IPR045864 -
Aary5g02626 1001 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 310 513 IPR018162 GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006419(InterPro)
Aary5g02626 1001 Coils Coil 488 508 - -
Aary5g02626 1001 PANTHER ALANYL-TRNA SYNTHETASE 48 997 IPR050058 GO:0002161(PANTHER)|GO:0004813(PANTHER)|GO:0005739(PANTHER)|GO:0006419(PANTHER)|GO:0009507(PANTHER)
Aary5g02626 1001 FunFam Alanine--tRNA ligase, cytoplasmic 633 808 - -
Aary5g02626 1001 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 734 792 IPR012947 GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro)
Aary5g02626 1001 FunFam Alanine--tRNA ligase 531 631 - -
Aary5g02626 1001 NCBIfam alanine--tRNA ligase 61 979 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Aary5g02626 1001 PRINTS Alanyl-tRNA synthetase signature 371 384 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Aary5g02626 1001 PRINTS Alanyl-tRNA synthetase signature 290 303 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Aary5g02626 1001 PRINTS Alanyl-tRNA synthetase signature 135 146 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Aary5g02626 1001 PRINTS Alanyl-tRNA synthetase signature 347 363 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Aary5g02626 1001 PRINTS Alanyl-tRNA synthetase signature 263 274 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Aary5g02626 1001 FunFam Alanine--tRNA ligase, cytoplasmic 56 306 - -
Aary5g02626 1001 SUPERFAMILY Translation proteins 558 632 IPR009000 -
Aary5g02626 1001 Pfam tRNA synthetases class II (A) 61 634 IPR018164 GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro)
Aary5g02626 1001 Coils Coil 800 827 - -
Aary5g02626 1001 CDD AlaRS-core 59 305 - -
Aary5g02626 1001 Hamap Alanine--tRNA ligase [alaS]. 57 1000 IPR023033 GO:0004813(InterPro)
Aary5g02626 1001 SMART tRNA-SAD-4 734 793 IPR012947 GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro)
Aary5g02626 1001 Pfam DHHA1 domain 849 995 IPR003156 GO:0003676(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aary5g02626 K01872 alanyl-tRNA synthetase [EC:6.1.1.7]
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Event-related genes

Select Gene_1 Gene_2 Event_name
174880 Aary5g02626 Aary13g03142
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
66651 Aary Aary15g02802 Aary-Chr15:209415830 Aary5g02626 Aary-Chr5:151671628
84789 Aary Aary5g02626 Aary-Chr5:151671628 Aary7g02987 Aary-Chr7:233995369
135469 Aary Aary13g03142 Aary-Chr13:186226882 Aary5g02626 Aary-Chr5:151671628
141657 Aary Aary15g02748 Aary-Chr15:206096945 Aary5g02626 Aary-Chr5:151671628
153522 Aary Aary5g02626 Aary-Chr5:151671628 Aary7g02962 Aary-Chr7:233064429