AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aary5g02771 ATGACGGAAATGCAACATTCCGTAATTTATTTGTTACTTTTAACCATTTTTTTCTTTCAGTTTCAAGCTCAAGCTCAAGCTGCTGCTCCGGTGATTAAGCAGTTATCTTCTATAATAAAGTGGACAGCTAGTAGGTCTTCTTCTAAATCTACTGTTTCAGATGGGAATATTCTTCAGTTTGAGGACGGGTATTTAGTAGAAACTGTTGTTGAAGGGAATCAGCTAGGGGTCGTGCCATATTCTATTCGAGTGTCACAGGAAGGTGAACTATATGCCGTCGATTCAGTCAATAGCAACATTGTTCGAATCACACCGCCTTTGTCTCAATATAGTAGGGCAAGATTGATTGCCGGGTCATTCCAAGGTTATACTGGACATGTAGATGGAAAACCAAATGATGCCCGTTTTGATCATCCTAAAGGGGTTACTATGGATGATAAAGGAAATGTTTACGTTGCTGATACCTCTAATCTTGCCATCAGAAAGATTGGTGAAACAGGTGTGACTACAATTGCTGGAGGAAAATCAAATGTAGCAGGGTACAGGGACGGCCCAAGTGAGGATGCACAGTTCTCAACTGATTTTGATGTAATTTATGTGAGGCCAACATGTTCGTTGCTTGTTATTGACCGGGGAAATGCTGCTCTTCGGCAAATTGCTCTCAATCAAGAGGATTGTGATTTCCACGATACCTCTGTCTCGTCCACAGATCTCATTCTGGTAGTCAGTGCCATATTGATAGGATACGTTTTTTGCAAACTTCAACAAGGATACGGTTCATCATATTTCGCAAAAGATAAGGTGGAGAGTGACACTAAACAACCAATCAAGGAAAACTCTCTTAAAACTCATACTGTGGAAACTGTTAAAGAGGAACAAGAAGCAGGATGGCCATCTTTCGGGCAGCTTGTTATGGATCTCTCAAAGCTTGCTATTGAAGGCTTTGGTAACATGTTCGTTTCTTTTAACCCCTTTAACATAGGTCCTAAAAGAGGCCTCACTCCATTAAAAGATCATCTCATAATGCCTGAAGATGAGCCTGCTAACCAGCCTCCATTAGTTAAAAAACACAGGACTCCAACTCCTCTCTCAGAAACCCGTCATGCCCACAACCCAAACGAAAATTACCCTGAAACAAAGCCTGCTAAGGTCAGATCATCTTCAAAAGATCCAAGCAAACATCGGGTCTCAAAACAAGAAGAATATGCAGAGTTTTACGGAGCTAGTGGCGAGGTCCCTCATGTTCGGTCAAAAAGCCAGAAGGAAAGAACCAAGCATCGGCCTAGGGATAAACGAGCTGAAGTTGTGTATGGAGAGCAAAAACCAGTTGACCCAAAACCGGTCAACTATGAGGATTCTAAGTTTAGTTATATGAGAAACAAGTATGGTGATTCGTATCGCTAA 1404 41.6 MTEMQHSVIYLLLLTIFFFQFQAQAQAAAPVIKQLSSIIKWTASRSSSKSTVSDGNILQFEDGYLVETVVEGNQLGVVPYSIRVSQEGELYAVDSVNSNIVRITPPLSQYSRARLIAGSFQGYTGHVDGKPNDARFDHPKGVTMDDKGNVYVADTSNLAIRKIGETGVTTIAGGKSNVAGYRDGPSEDAQFSTDFDVIYVRPTCSLLVIDRGNAALRQIALNQEDCDFHDTSVSSTDLILVVSAILIGYVFCKLQQGYGSSYFAKDKVESDTKQPIKENSLKTHTVETVKEEQEAGWPSFGQLVMDLSKLAIEGFGNMFVSFNPFNIGPKRGLTPLKDHLIMPEDEPANQPPLVKKHRTPTPLSETRHAHNPNENYPETKPAKVRSSSKDPSKHRVSKQEEYAEFYGASGEVPHVRSKSQKERTKHRPRDKRAEVVYGEQKPVDPKPVNYEDSKFSYMRNKYGDSYR 467
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aary5g02771 467 Gene3D - 15 221 IPR011042 -
Aary5g02771 467 MobiDBLite consensus disorder prediction 383 401 - -
Aary5g02771 467 PANTHER - 18 463 - -
Aary5g02771 467 MobiDBLite consensus disorder prediction 342 467 - -
Aary5g02771 467 SUPERFAMILY NHL repeat 76 185 - -
Aary5g02771 467 Pfam NHL repeat 136 162 IPR001258 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aary5g02771 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aary Aary-Chr3:81672228 Aary5g02771 Aary-Chr5:164355499 dispersed
Aary Aary-Chr5:164355499 Aary17g01145 Aary-Chr17:92095881 transposed