AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aary5g02786 ATGAGGTGCAATGCGTGCTGGCGGGAGCTGGAAGGACGGGCTATAACTACCACATGTGGCCATCTCTTATGCAATGAAGATGCCAGTAAGATACTAAGCAACGATGCAGCTTGCCCTATTTGTGATCAAGTACTTTCTAAAAGTCTTATGAAACCTGTGGATACAAACCCAAGTGACGAATGGGTTAATATGGCTATGACTGGATTATCTCCACAGCTACTAATGAAGAGTGCATATAGAAGCGTCATGTTCACCATTGGACAGAAGGAACTAGAAATGCAATTCAAGATGAACAGGATAGTAGCTCAGTGCCGGCAGAAATGTGATGCGCTGCAAGAAAAGTTCACAGAAAAAATGGAGCAGGTGCATACCGCATATCAGAAAATGGGCAAAAGGTGCCAGATGATGGAACAAGAAATTGAAAACTTGTCTAAAGATAAACAGGAGCTCCAAGAAAAATATTCTGAAAAGTCCAGGCAGAAGAGAAAACTGGACGAGATGTACGACCAATTGAGAAGTGAGTATGAGTCGGTCAAACGGTCAGCCATTCAACCTGCAAACAACTTCTTCTCAAGGGCAGAGCCTGATTTGTTTCCCAGTCCTGCCAACATGATGAATAACAGAGATACCACAAGGAAAGATTGGTCGGTTTTCACCCCTGACACTCCAGGACCTCGTGAAGATATATGGCCACAGACAACTAGACAGAACAGTTCGAACTCAGGGCCATTCGACATCACCAACACCCCACCTGCTAAACATTCAGCAATCCCAGTTGAAAGCAGAAGACCAGCTGGTCGTCCCATGTTTGGAGCTGGAGGTGGAGCAAGCAATCCTTCTATGACCCTAAGAAATCTTATATTATCACCAATGAAGAAGCCTCAACTCTCACGTAGCAGACCTCAACTGTTTACGTTATAG 921 44.52 MRCNACWRELEGRAITTTCGHLLCNEDASKILSNDAACPICDQVLSKSLMKPVDTNPSDEWVNMAMTGLSPQLLMKSAYRSVMFTIGQKELEMQFKMNRIVAQCRQKCDALQEKFTEKMEQVHTAYQKMGKRCQMMEQEIENLSKDKQELQEKYSEKSRQKRKLDEMYDQLRSEYESVKRSAIQPANNFFSRAEPDLFPSPANMMNNRDTTRKDWSVFTPDTPGPREDIWPQTTRQNSSNSGPFDITNTPPAKHSAIPVESRRPAGRPMFGAGGGASNPSMTLRNLILSPMKKPQLSRSRPQLFTL 306
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aary5g02786 306 ProSiteProfiles Zinc finger RING-type profile. 3 42 IPR001841 -
Aary5g02786 306 FunFam E3 ubiquitin-protein ligase CCNB1IP1 homolog 1 53 - -
Aary5g02786 306 Coils Coil 126 181 - -
Aary5g02786 306 SUPERFAMILY RING-U-box 2 50 - -
Aary5g02786 306 Gene3D alix-aip1 like domains 66 197 - -
Aary5g02786 306 Coils Coil 101 121 - -
Aary5g02786 306 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 1 65 IPR013083 -
Aary5g02786 306 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CCNB1IP1 HOMOLOG 1 306 - GO:0051026(PANTHER)
Aary5g02786 306 MobiDBLite consensus disorder prediction 221 258 - -
Aary5g02786 306 Pfam zinc-RING finger domain 2 43 IPR001841 -
Aary5g02786 306 MobiDBLite consensus disorder prediction 229 248 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aary5g02786 K10639 E3 ubiquitin-protein ligase CCNP1IP1 [EC:2.3.2.27]