AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aary5g02815 ATGTCTTTTACACTAGTCCCTTTAACGTCCACATTCACTTCATTTCCATCTAAACAATTAGCCACATCCACCAACTCACAATTCATCTCCAAGGCTCGAACCAACCAAACCCATGGTTTCAAAGTCTCATGCAACGCTTCACCCGAAGACAATGAGAACCATCTCATACTACCCGAAACACAAAAGCTTATACTACCCAATAATGTAGACCGAAGGAACCTCCTCGTGGGGCTTGGCGGTCTGTATACGGCAGCAAGCCTTACTTCACTCCCGTCAGCCTTTGCTAGTCCCATTACGGCTCCTGATATCTCGTCCGTATGCCAGGACGCAAAAACAGGTTTTGAGGCGTCGAAGGACGATAAGGAGGCTGTACGGACGGGGAAATGCTGCCCTCCGAGCCTCGGCAAGCCGATTCAACCGTTTGTGTTTCCAAGTAAAGAAAAGACCAGGGTGCGATGGCCGGCTCATAAAGGGACGGATAAGCAAGTGAAGAGCTACAAGAAAGCCATTAAAGCCATTCTGGATCTCCCAGATGACCACCCGCACAGCTTCGCAAGCCAAGCTAAGATTCATTGTGCTTATTGTAACGGTGGTTATACTCAAGTCGATAGCGGTTTCCCAGATATCGAAATTCAGATTCATAACTCGTGGCTATTCTTTCCATTCCATCGTTGGTACCTTTATTTCTATGAAAGAATTCTCAGAAAGTACAGTGGGGATGACGATTTCGCGTTACCTTACTGGAACTGGGACAATCCAGATGGAATGACAATTCCTCAAATGTTTGTAGAAGCAAAAGATGATGGCGGAAACGAAAATCCTCTCTATGACATAAACCGGGACGTGCGTCATCTCCCACCAAAAGTAGTAGATCTGTTCTTTAGTGGAGCCAAGATAGCAAATAATTTTGCGAATGAACTAGACAGTGAAACACAGAAAGCCTGCAATCTTAGTATGGTGTACAAAGATTTGATCAGAAACGCAACTGATTGGAAAAGCTTCTTCGGAGGAGAATACACGGCTGGGCCGCAGACTGATACGGCGTCAGTCGGGTCTGTGGAAAGCAACACTCACACTGCTGTACACGTATGGGTTGGTAACCCAGATAACCTTAATAGAGAGGACATGGGCAACTTCTACTCTGCGGGATATGATCCTTTGTTTTACGTTCACCATGCAAACGTCGACCGTATGTGGAAACTGTGGAAGGATTTGGGAATTCCTGGACATTCAGAACCAACCGCGGATGACTGGCTAAATGCATCATATGTGTTCTATGACGAGAATGAGAATCTTGTACGTGTAAACAACAAAGACTCTGTCAACATAGATAAGCTCAAATATGATTTTGAAGAGTCAAGGACACCTTGGAAGGGCAGTCGACCTCCCCAACGTAAGGAGAAGTCCAAAGAATTATCGAAGGCACTTATTGGAGAGACGAAAACGGTGGAGGAAGCCTTTAAGAAACCAGCGCGTCTGGACCCACTTCTCAAGGTTCGTGTGAAGAGGCCAACTAAGAACAGAAGTCCCGAGGATAAGGCCAAGGCGAATGAGATTTTGTGTATAAACGGGATACAATTCAACAGCAACAAGTTTGTGAAATTCGACGTGTTTGTGAATGATAAAGTGGACACAAACGGGACGCTGCCAACAGCTTGTGATCCTGAGTTTGCTGGTTCTTTTGCACAGGTTCCACACAGTGGCAACGAACAAGGTGGAATGTTGATGTCAAGTGCAGCGAGGTTCGGTTTGAATGATCTTTTGGACGACACAAAAACTGAAGACGAAGAGTATGCGTTGGTGGCTTTGGTGGCAAGGGCAGGTTGCGAAGATCTCACTGTCTCAGGGATCGAGATCAAGTTGGTTCCTATTGGTTCCACTTAG 1884 45.97 MSFTLVPLTSTFTSFPSKQLATSTNSQFISKARTNQTHGFKVSCNASPEDNENHLILPETQKLILPNNVDRRNLLVGLGGLYTAASLTSLPSAFASPITAPDISSVCQDAKTGFEASKDDKEAVRTGKCCPPSLGKPIQPFVFPSKEKTRVRWPAHKGTDKQVKSYKKAIKAILDLPDDHPHSFASQAKIHCAYCNGGYTQVDSGFPDIEIQIHNSWLFFPFHRWYLYFYERILRKYSGDDDFALPYWNWDNPDGMTIPQMFVEAKDDGGNENPLYDINRDVRHLPPKVVDLFFSGAKIANNFANELDSETQKACNLSMVYKDLIRNATDWKSFFGGEYTAGPQTDTASVGSVESNTHTAVHVWVGNPDNLNREDMGNFYSAGYDPLFYVHHANVDRMWKLWKDLGIPGHSEPTADDWLNASYVFYDENENLVRVNNKDSVNIDKLKYDFEESRTPWKGSRPPQRKEKSKELSKALIGETKTVEEAFKKPARLDPLLKVRVKRPTKNRSPEDKAKANEILCINGIQFNSNKFVKFDVFVNDKVDTNGTLPTACDPEFAGSFAQVPHSGNEQGGMLMSSAARFGLNDLLDDTKTEDEEYALVALVARAGCEDLTVSGIEIKLVPIGST 627
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aary5g02815 627 SUPERFAMILY Di-copper centre-containing domain 128 457 IPR008922 -
Aary5g02815 627 ProSitePatterns Tyrosinase CuA-binding region signature. 214 231 IPR002227 GO:0016491(InterPro)
Aary5g02815 627 Pfam Common central domain of tyrosinase 182 404 IPR002227 GO:0016491(InterPro)
Aary5g02815 627 PIRSF PPO-plant 1 623 IPR016213 GO:0004097(InterPro)|GO:0046148(InterPro)
Aary5g02815 627 Pfam Protein of unknown function (DUF-B2219) 490 621 IPR022740 GO:0004097(InterPro)
Aary5g02815 627 Pfam Polyphenol oxidase middle domain 414 462 IPR022739 GO:0004097(InterPro)
Aary5g02815 627 ProSitePatterns Tyrosinase and hemocyanins CuB-binding region signature. 385 396 IPR002227 GO:0016491(InterPro)
Aary5g02815 627 PRINTS Tyrosinase copper-binding domain signature 245 250 IPR002227 GO:0016491(InterPro)
Aary5g02815 627 PRINTS Tyrosinase copper-binding domain signature 214 231 IPR002227 GO:0016491(InterPro)
Aary5g02815 627 PRINTS Tyrosinase copper-binding domain signature 357 368 IPR002227 GO:0016491(InterPro)
Aary5g02815 627 PRINTS Tyrosinase copper-binding domain signature 384 402 IPR002227 GO:0016491(InterPro)
Aary5g02815 627 PANTHER TYROSINASE FAMILY MEMBER 69 585 IPR050316 -
Aary5g02815 627 Gene3D - 96 455 IPR008922 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aary5g02815 K00422 polyphenol oxidase [EC:1.10.3.1]
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Event-related genes

Select Gene_1 Gene_2 Event_name
4534 Aary10g05208 Aary5g02815
9252 Aary2g01723 Aary5g02815
9853 Aary5g02815 Aary7g02547
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aary Aary-Chr13:195525849 Aary5g02815 Aary-Chr5:168414233 dispersed
Aary Aary-Chr5:168151198 Aary5g02815 Aary-Chr5:168414233 dispersed
Aary Aary-Chr5:168414233 Aary9g00971 Aary-Chr9:89883972 dispersed
Aary Aary-Chr5:168271977 Aary5g02815 Aary-Chr5:168414233 tandem