AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aary5g02817 ATGGGGAATAAATTGGGTAGAAGGAGACAAATAGTTGATGAAAAGTATACAAAGCCACAAGGGTTGTATCAACATAAAGATGTTGATCATAAGAAGCTTAGGAAGCTTATACTTGATGCGAAACTAGCTCCGTGTTATCCGGGTGATGATGATTGTAGTTGTGATCTTGAAGAATGTCCAATTTGTTTCTTGTATTATCCAAGTTTGAATAGATCAAGATGTTGCACGAAAGGCATTTGCACCGAGTGCTTTCTCCAAATGAAGACACCGAATTCTACACGTCCTACGCAATGTCCGTTTTGTAAAACGTTAAATTACGCTGTGGAGTATAGAGGCGTGAAGAGTAAAGAGGAAAAGGGGCTGGAGCAAATTGAAGAACAAAGGGTGATAGAAGCAAAAATAAGAATGAGACAACAAGAAATTCTAGATGAAGAGGAAAGAATGATAAAAAGGCAAGAGATGAGCTCTTCAAGCAGCATAATTGAACCAAACGTGACTGAATATTTCTCCAGAGCAGCAACATCTTCTTCTGAAAGTGAGGAAATTGTCTCTGCTCCACAGCAGAGTGGCACTGAAATTCGACATCCTCTGCGCTCTAGGGAGAACAGAGATGATGAATTTGACCTTGATCCTGAGAACATAATGCTTATGGAAGCCATCTGGTTGTCCTATCAGGAGGATAACAAGCACCAACACCATAACCCAAACTATGGCGACGCTGCACAACTAGCAAAATATGCAACAGAAGTTCGTGTATTAGCATCCATGGCTCCGCAATCCGAAATGGCATCAGCATCTTCATCATCATCACCTTCTGGAGGTCTGGCATGTGCTATAGCTGCACTAGCCGAACGCCAACAAACGGGAGCAGAATCATCAACTAATTACCTCAACTACGGCGTTAATACCTCAACATACAACATACATCCCGACCATAGCTCAACAGGGTTGTCACTTAATAACCATCTACAAATAAGCAGACAAGAACATGAATCATGGGGTGAAAATGTAGTTGAACCTGAAACTGGTTATGGGTATGATCATTATGATAATGTCCACAGAGGACAGTTTGTGCAACAAGATGAGAATATAGTTCCTGAAAGCTTTGAAGAGCAGATGATGTTAGCTATGGCGGTTTCATTGGCAGAGGCTCGAGCTAGGACTAGTAGTAGTACACCAGAAGTTGCTTGGATTTAG 1197 41.52 MGNKLGRRRQIVDEKYTKPQGLYQHKDVDHKKLRKLILDAKLAPCYPGDDDCSCDLEECPICFLYYPSLNRSRCCTKGICTECFLQMKTPNSTRPTQCPFCKTLNYAVEYRGVKSKEEKGLEQIEEQRVIEAKIRMRQQEILDEEERMIKRQEMSSSSSIIEPNVTEYFSRAATSSSESEEIVSAPQQSGTEIRHPLRSRENRDDEFDLDPENIMLMEAIWLSYQEDNKHQHHNPNYGDAAQLAKYATEVRVLASMAPQSEMASASSSSSPSGGLACAIAALAERQQTGAESSTNYLNYGVNTSTYNIHPDHSSTGLSLNNHLQISRQEHESWGENVVEPETGYGYDHYDNVHRGQFVQQDENIVPESFEEQMMLAMAVSLAEARARTSSSTPEVAWI 398
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aary5g02817 398 ProSiteProfiles Zinc finger RING-type profile. 59 102 IPR001841 -
Aary5g02817 398 MobiDBLite consensus disorder prediction 176 193 - -
Aary5g02817 398 MobiDBLite consensus disorder prediction 176 205 - -
Aary5g02817 398 PANTHER PROTEIN SIP5 1 293 IPR039301 GO:0005737(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aary5g02817 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
4537 Aary10g05210 Aary5g02817
9255 Aary2g01724 Aary5g02817
168163 Aary5g02817 Aary13g03290
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aary Aary-Chr10:286462610 Aary5g02817 Aary-Chr5:169003677 wgd
Aary Aary-Chr13:195818483 Aary5g02817 Aary-Chr5:169003677 wgd
Aary Aary-Chr2:126250569 Aary5g02817 Aary-Chr5:169003677 wgd