AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aary5g02837 ATGAGAGAAGAAGGCATGAGCTCAACTGGGGACCCACTTCTTTTCCCCAATTCACCTCCTCATACTGCTGCTGCTAGTTCTGCTGGGGCATCATCACCAGCATTTGCCACCAATGCTGGCAGTGCAGATTGGTTGGGTCATGGACAGGGATCCAAAGCAGGTTCTCTATCTCGGATTAGTTCACAGCCTATGTGGATTTCGTTGAGTACAAGTGCTTGTGGTTCAGCTCTTGGCTCGTCCCAACCTTCATGTAGACCATGGGAAAGGGGTGACCTTCTTAGACGACTGTCCACATTCAGGCCTGCAAATTGGTTTGGAAAGCCTAAGGCTGCTAGCTCACTTGCCTGTGCTAGAAGAGGGTGGGTGAATGTGGATGTTGATAAGATTCAGTGTGAGTCTTGTGGTGCAAACCTGAAATATAATGCACCGGATTCACATGCTCATACGGAAGGTGAAAATGGTGAAGAATTTGCCAATCAGCTCGATGAAGGACATAATGTCACATGTCCATGGAGAGGAAACAGCTGTGCAGAAAGTTTAGTGCAGTTCCCACCTACTCCTCCATCAGCCCTTATCGGGGGTTACAAGGACCGTTGTGATGGACTCCTACAGTTTCCGTATCTACCCGTTGTGGCTGCTTCTGCCATTGAGCAGATGAAACTTTCTAGAGGTCCAGAAATCGACCGCTTTCTGGTTCAGTCATCTGGTTTTTTAATAGATGTTGCATCTGATTTGGAGATAAGCGTATATTCACGTGCCCAGAAGTTAATAAGCCTTTGTGGATGGGAACCAAGGTGGCTTTCAAATGTTCAAGACTGTGAAGAACATTCTGCTCAATCTGCTAGGAATGGGGCTTCTTTCAGTCCAATTAAAGATGATAGAAATCGTAACAAGAAACCTATGTCTGCTTCAACCAAAAAAATTCCTCGGGCCCCATCAAAGTTTGAATCTAGATCACCACTGTTGGATTGCAGCTTATGTGGCGCCACAGTGAGAATCTTGGATTTTATTCGAGTTAATCGTCCAGCTCGTTTTGCTCCTAACAACATCGATGTTCCTGAAACAAGTAAAAAGATGGCACTTACTCGTGGGGTAAGTGCTGCTAGTGGAATTAGTGGGTGGGTAGCAGATGGTGGTGGGGAGAAAGAGCAAACAGAAGACATTGATGAAGCTGCAACCACCGGAGACGGGAAGTCGATGTCGAATATTAGGGTTGATTTAAATCTCACAATGGGAAGTGGGTTTCCTATGGGACACGGGAACAAGAGACCAATATCTGAACTATACCAAGAAGTAAATATAGGGAGGGATTTAGCCATTGGGCAGCCAGCTGGCAGTGAGGTCGGCGATCGGGCACAATCATTTGAATCCCGAGGTCCTACTACTTTTAAAAGGAACATGGATGAAGGTGGGTCTACTGTCGATAGGCCACAAGGGATAATTCGTCAGGCGGATAGCGTTGAAGGGATTGTTATTGACCGTGATGGTGATGAAGTCAATGATAGCAAGATGTCCCCGGGCCCATCTAAACGTGCACGTGAGTCTCATGCCTTTGAACACTTTGAACCATCGTCTGGTGCGGGCCCTGGCCAAACATTGTATTTTGATATTGGAAGGGCGGGGCCTTCAAGTCAAGGCAATGAACTGACGGGCCGAGCTTCATCTGTTATAGCAATGGATACAGTTTGTCATAGTGATGATAACGATTCTATGGAAAGTGTCGAAAATCATCCGGGTTTTATTGATGAGGTCAATTACCCATCTGGGTCAGGAGTCAAAAGCCCAGATGTCAATGATAATTCTGATTTAAACGTTAGTATTCAGGCTCAGCAAAGTGTGTGCCCGCCTGCGGTTCATGTCACAGGTGAGATAGGTGTTAGCAGCACCAATGATGAAGAAGTACTGAACACTGATACTGCCACAATTCAAGGGCGGGATGGTCCTAGTTTTGCTATTAGTGGTGGCAGTGTTGGTATGGGTGTGAGTCATGAAGCTGAGATTCATGGCTCTGATGCTTTGATTCATAGGACGGAAAGTGTTGTGGGTGACATGGAACCTGTTACTGGCGTGACCGAAAATCAAGGTCAAACTGGTGAATTTGTCCCGGAGGAAGTGCAGCAAGAATGTTCTGGAAGGGCAGATAGCGGGTCAAAGATTGTTGGTTCGGTCAAGGCGGAATCTGTTGAGAGTGGTGACAAGACCAGTGATTTGAATCTTTTGCCACATGAGCAGAGTGATCATCCGTCGCTTTCTTGCAACGCAGTTGTGTTTTCTGGGATTGAAGCATCAAAGGATGAAGTGACACAGGGGGGGAAGTCGTCTCCTAACGATGAATGTGGCTATCCAAGTTATCCGCCTGTAAACGGTATAGGGCCTCCAAATGGAGAAAGCAACTTTGAAGAAGCAGTTGAGTTTGATCCAATCAAGCATCATAATTTCTTCTGCCCATGGGTGAATGGAAATGTTGCTGCAGCTGGGGTTAGCAACAATACTAACGGTGCAAGTGCCAGCTCAAGTGTTAGCGGTCTAGCTCTCTGTGGCTGGCAGCTGACTTTGGATGCTTTAGATGGCTTCCAAGGACCTGAACAAAATCAAACTGTGGAATCTGAATCTGCTGCTTCTCTCTACAAGGATGAGCATCAAGCTTCTGGTCGAAAACTCATGGCAAGACACTCCTTCAACAGAAGCCATGGCCATAGCTGA 2703 46.61 MREEGMSSTGDPLLFPNSPPHTAAASSAGASSPAFATNAGSADWLGHGQGSKAGSLSRISSQPMWISLSTSACGSALGSSQPSCRPWERGDLLRRLSTFRPANWFGKPKAASSLACARRGWVNVDVDKIQCESCGANLKYNAPDSHAHTEGENGEEFANQLDEGHNVTCPWRGNSCAESLVQFPPTPPSALIGGYKDRCDGLLQFPYLPVVAASAIEQMKLSRGPEIDRFLVQSSGFLIDVASDLEISVYSRAQKLISLCGWEPRWLSNVQDCEEHSAQSARNGASFSPIKDDRNRNKKPMSASTKKIPRAPSKFESRSPLLDCSLCGATVRILDFIRVNRPARFAPNNIDVPETSKKMALTRGVSAASGISGWVADGGGEKEQTEDIDEAATTGDGKSMSNIRVDLNLTMGSGFPMGHGNKRPISELYQEVNIGRDLAIGQPAGSEVGDRAQSFESRGPTTFKRNMDEGGSTVDRPQGIIRQADSVEGIVIDRDGDEVNDSKMSPGPSKRARESHAFEHFEPSSGAGPGQTLYFDIGRAGPSSQGNELTGRASSVIAMDTVCHSDDNDSMESVENHPGFIDEVNYPSGSGVKSPDVNDNSDLNVSIQAQQSVCPPAVHVTGEIGVSSTNDEEVLNTDTATIQGRDGPSFAISGGSVGMGVSHEAEIHGSDALIHRTESVVGDMEPVTGVTENQGQTGEFVPEEVQQECSGRADSGSKIVGSVKAESVESGDKTSDLNLLPHEQSDHPSLSCNAVVFSGIEASKDEVTQGGKSSPNDECGYPSYPPVNGIGPPNGESNFEEAVEFDPIKHHNFFCPWVNGNVAAAGVSNNTNGASASSSVSGLALCGWQLTLDALDGFQGPEQNQTVESESAASLYKDEHQASGRKLMARHSFNRSHGHS 900
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aary5g02837 900 MobiDBLite consensus disorder prediction 444 476 - -
Aary5g02837 900 MobiDBLite consensus disorder prediction 11 32 - -
Aary5g02837 900 MobiDBLite consensus disorder prediction 278 314 - -
Aary5g02837 900 PANTHER NUCLEAR-INTERACTING PARTNER OF ALK 1 898 - GO:0005634(PANTHER)
Aary5g02837 900 Pfam C3HC zinc finger-like 86 205 IPR012935 GO:0008270(InterPro)
Aary5g02837 900 MobiDBLite consensus disorder prediction 1 32 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aary5g02837 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aary Aary-Chr11:38250021 Aary5g02837 Aary-Chr5:172024330 dispersed
Aary Aary-Chr3:30359927 Aary5g02837 Aary-Chr5:172024330 dispersed
Aary Aary-Chr5:171203320 Aary5g02837 Aary-Chr5:172024330 proximal
Aary Aary-Chr15:197642583 Aary5g02837 Aary-Chr5:172024330 wgd
Aary Aary-Chr5:172024330 Aary7g02536 Aary-Chr7:214795550 wgd