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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aary5g02862 ATGCTTCATCAAATTCCACTTCCCCAAAACATGTCTCTGACAACTACACAAACTCACACTGATCTTGATCTGATGACTATGAATCAGAAGCCAGTTCTTATCAGATCGGGTGAGATTCATGTGATTGTGGGCCCCATGTTTGCTGGTAAAACAACTGCTCTTCTTCGTAGGATTAAATCTGAAGCAACTAATGGAAGGAATATAGCAATGATAAAGTCGAGCAAGGATAATCGATATGCGATAGATTCAGTTGTGACACATGATGGAACAAAGTATCCTTGTTGGGCACTTCCTGATTTGTTGTCTTTTAAACAAAGACTTGGGGAAGAAGCTTATGAAAAGCTGGATGTTATTGGGATTGATGAGGCACAATTTTTTGATGATCTGTATGACTTCTGTTCTAAAGCTGCTGATAATGATGGTAAAACTGTTATAATTGCTGGTCTTGATGGTGATTACTTAAGAAGGAACTTTGGTCCGGTTCTTGATATAGTACCACTTGCTGATACCATAACCAAGTTAACCGCTCGATGTGAAGTATGTGGTAAACGAGCCCATTTCACTTTTAGGAAGACCAACGAGACAAAAACAGAACTTATTGGCGGGGCGGATATGTATATGCCTGTTTGTCGTCAACATTATGTTAGCGGACAAGCGGTGATAAAAAACACTATACAAACAACCTCAACGACCACGGCTTAA 702 39.74 MLHQIPLPQNMSLTTTQTHTDLDLMTMNQKPVLIRSGEIHVIVGPMFAGKTTALLRRIKSEATNGRNIAMIKSSKDNRYAIDSVVTHDGTKYPCWALPDLLSFKQRLGEEAYEKLDVIGIDEAQFFDDLYDFCSKAADNDGKTVIIAGLDGDYLRRNFGPVLDIVPLADTITKLTARCEVCGKRAHFTFRKTNETKTELIGGADMYMPVCRQHYVSGQAVIKNTIQTTSTTTA 233
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aary5g02862 233 FunFam Thymidine kinase 175 217 - -
Aary5g02862 233 FunFam Thymidine kinase 34 174 - -
Aary5g02862 233 Gene3D - 175 216 - -
Aary5g02862 233 ProSitePatterns Thymidine kinase cellular-type signature. 201 214 IPR020633 GO:0004797(InterPro)|GO:0005524(InterPro)
Aary5g02862 233 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 175 IPR027417 -
Aary5g02862 233 Gene3D - 34 174 IPR027417 -
Aary5g02862 233 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 175 217 - -
Aary5g02862 233 PANTHER THYMIDINE KINASE 35 226 IPR001267 GO:0004797(PANTHER)|GO:0004797(InterPro)|GO:0005524(InterPro)|GO:0046104(PANTHER)
Aary5g02862 233 PIRSF Tdk 34 229 IPR001267 GO:0004797(InterPro)|GO:0005524(InterPro)
Aary5g02862 233 Pfam Thymidine kinase 37 214 IPR001267 GO:0004797(InterPro)|GO:0005524(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aary5g02862 K00857 thymidine kinase [EC:2.7.1.21]
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Event-related genes

Select Gene_1 Gene_2 Event_name
168182 Aary5g02862 Aary13g03393
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aary Aary-Chr5:174377423 Aary6g01767 Aary-Chr6:106180771 dispersed
Aary Aary-Chr13:203078275 Aary5g02862 Aary-Chr5:174377423 wgd