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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aary5g02870 ATGTCGTTGACTGTTGAATCTGTTTCTGGTTGTTCCAAGGACATGGGGTTCGAAGAAAACAAGGAACAAGGCAAAGAAAGTATCAAAAGAAGTGGGAGTGAATCTTCATTTTGTGAAAGTGAAAATGAAGGAGATGAAGTTGAAGATATTAAAATTGAATTGGGTCCTCAATTCACCCTTAAAGATCAACTTGAGAAGGATAAGGATGATGAGAGTCTGAGAAAGTGGAAAGAACAACTACTTGGGAATGTTGATATTAATGATGTTGGAGAATCATTAGAACCAGAAGTGAAGATCCTCAGCCTTTCAATACTGTCCCCAGGAAGATCCGACATTGTTCTTGCAATACCCACAGATGGAAAACCTGAAGGCTCATGGTTTACACTGAAAGAAGGTTCTCGTTACAGCCTCAGGTTCTCCTTTCAAGTTAAACATAACATTGTTTCCGGTTTAAAGTACACCAACAATGTATGGAAAACTGGCGTCAAGGTGGATAACGCAAAACAGATGCTTGGTACTTTTAGTCCACAGCAAGAAGCATACACTTATGATATGCCTGAGGAGACTACACCTTCTGGTTACTTTGCAAGAGGATCTTACTCCGCTAAAACGAAGTTTGTTGATGATGACAACAAATGCTACTTGGAGATTGGATATACCTTTGATATCCGAAAAGATTGGGCGAGTGGTGAATAG 696 39.66 MSLTVESVSGCSKDMGFEENKEQGKESIKRSGSESSFCESENEGDEVEDIKIELGPQFTLKDQLEKDKDDESLRKWKEQLLGNVDINDVGESLEPEVKILSLSILSPGRSDIVLAIPTDGKPEGSWFTLKEGSRYSLRFSFQVKHNIVSGLKYTNNVWKTGVKVDNAKQMLGTFSPQQEAYTYDMPEETTPSGYFARGSYSAKTKFVDDDNKCYLEIGYTFDIRKDWASGE 231
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aary5g02870 231 PANTHER RHO GDP-DISSOCIATION INHIBITOR 31 227 IPR000406 GO:0005094(InterPro)|GO:0005094(PANTHER)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0005829(PANTHER)|GO:0007266(PANTHER)|GO:0007266(InterPro)|GO:0016020(PANTHER)
Aary5g02870 231 Pfam RHO protein GDP dissociation inhibitor 41 226 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Aary5g02870 231 MobiDBLite consensus disorder prediction 1 49 - -
Aary5g02870 231 MobiDBLite consensus disorder prediction 15 29 - -
Aary5g02870 231 FunFam Rho GDP-dissociation inhibitor 1 50 229 - -
Aary5g02870 231 Gene3D Coagulation Factor XIII, subunit A, domain 1 50 229 IPR024792 -
Aary5g02870 231 PRINTS RHO protein GDP dissociation inhibitor signature 147 163 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Aary5g02870 231 PRINTS RHO protein GDP dissociation inhibitor signature 180 192 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Aary5g02870 231 PRINTS RHO protein GDP dissociation inhibitor signature 164 179 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Aary5g02870 231 PRINTS RHO protein GDP dissociation inhibitor signature 206 223 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Aary5g02870 231 SUPERFAMILY E set domains 41 227 IPR014756 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aary5g02870 K12462 Rho GDP-dissociation inhibitor
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Event-related genes

Select Gene_1 Gene_2 Event_name
8190 Aary17g02470 Aary5g02870
9863 Aary5g02870 Aary9g02595
168187 Aary5g02870 Aary13g03402
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aary Aary-Chr4:948266 Aary5g02870 Aary-Chr5:174706135 dispersed
Aary Aary-Chr5:44597908 Aary5g02870 Aary-Chr5:174706135 dispersed
Aary Aary-Chr5:147685260 Aary5g02870 Aary-Chr5:174706135 dispersed
Aary Aary-Chr5:174706135 Aary7g00565 Aary-Chr7:30493804 dispersed
Aary Aary-Chr13:203261881 Aary5g02870 Aary-Chr5:174706135 wgd
Aary Aary-Chr15:215484183 Aary5g02870 Aary-Chr5:174706135 wgd
Aary Aary-Chr17:147364288 Aary5g02870 Aary-Chr5:174706135 wgd
Aary Aary-Chr5:174706135 Aary9g02595 Aary-Chr9:156177288 wgd