AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aary5g02878 ATGCAGTTCTCGATGACCATAACAAACCCATCATTCACATACCCGTCACCTATCCACCAATCCAAACACCACCCAATGTTTCCTCTCAAAACCCCATCAAAACCCCACCTCATAAAATCCCAAAAAAACTCAGGGTTTTTATCAGCAATTGGTAATGCAATTGAAGAGCAAGAATATAGGAAAGCTAGAGCTGAAGTTATAAGGAAAGGGACTGGTTTAGATGGTTATAATATTGAAGGGATTTCAATTGGTGGTCATGAAACTTGTGTTATTATTCCTGAATTGAAATGTGCTTTCGATATTGGCCGGTGTCCTGCGCGAGCTGTGGCGATGAATTTCTTGTTTATTACTCATGGACATCTTGATCATATTGGTGGGCTACCCATGTATATTGCTACACGTGGTTTATACAGCATGACTCCACCCACTGTATTTGTACCTCCTTCCATCAAAGATGATGTTGAAAACTTGATTGAGCTTCACAGGAAGATGGGTCAAGTGGAATTGAATGTTGATTTGGTTGCATTGGATATAGGAGAAACATACGAGCTACGAAACGACCTTGTTGTACGCCCATTTAAAACACACCATGTCATACCGAGTCAGGGTTATGTCATTTACTCTGTTCGCAAGAAGCTCAAGAAGCAATATATTCATCTAAAAGGAAGGGAGATTGAGAAAAAGAAGAAATCTGGTGTCGAGATAACGGATATCATATTGTCTCCTGAGGTGGCATTCACCGGAGATACAACTTCTGATTTTCTACTTGATCCAAGAAGCTCTGATGCCTTGAGAGCAAAAGTTCTTATAACTGAGGCTACATTTTTGGACAATAAATGTGACATTGAGCATGCACGAGAACATGGTCACATGCATATTGACGAGATTATAGAGAATGCTAAGTGGATCCGTAACAATGCCATTCTTTTGACCCATTTCTCCTCCCGCTACCATATTGAGGAAATTCGACAAGCTGTGACGAAGTTACAGTCGAAGGTTTCAGCCAAAGTGGTTCCGCTTACAGAAGGTTTTAGATCAATGTACTCATCATAA 1053 40.46 MQFSMTITNPSFTYPSPIHQSKHHPMFPLKTPSKPHLIKSQKNSGFLSAIGNAIEEQEYRKARAEVIRKGTGLDGYNIEGISIGGHETCVIIPELKCAFDIGRCPARAVAMNFLFITHGHLDHIGGLPMYIATRGLYSMTPPTVFVPPSIKDDVENLIELHRKMGQVELNVDLVALDIGETYELRNDLVVRPFKTHHVIPSQGYVIYSVRKKLKKQYIHLKGREIEKKKKSGVEITDIILSPEVAFTGDTTSDFLLDPRSSDALRAKVLITEATFLDNKCDIEHAREHGHMHIDEIIENAKWIRNNAILLTHFSSRYHIEEIRQAVTKLQSKVSAKVVPLTEGFRSMYSS 350
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aary5g02878 350 PANTHER TRNASE Z TRZ1 35 344 - -
Aary5g02878 350 Gene3D - 76 345 IPR036866 -
Aary5g02878 350 Pfam Beta-lactamase superfamily domain 110 313 IPR001279 -
Aary5g02878 350 SUPERFAMILY Metallo-hydrolase-oxidoreductase 110 327 IPR036866 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aary5g02878 K00784 ribonuclease Z [EC:3.1.26.11]
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Event-related genes

Select Gene_1 Gene_2 Event_name
168195 Aary5g02878 Aary13g03426
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aary Aary-Chr11:33417090 Aary5g02878 Aary-Chr5:175594589 dispersed
Aary Aary-Chr3:24985844 Aary5g02878 Aary-Chr5:175594589 dispersed
Aary Aary-Chr13:205856772 Aary5g02878 Aary-Chr5:175594589 wgd