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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aary5g02899 ATGGCAGAAAACCAAGCCAATCACTCGGACCTAATCACATCCTTCACCGAAATCACCTCATCTTCAATCGAAGAAGCCACTTTCTTCCTCGAATCACACAACTTCGATCTCGACTCCGCCGTCTCCACCTTCTTCGAAACCACCACCACCACCACCGCCGTACCAACAAACCCTAACTTTCAACAAAACGATGCTAATGCTAACGCTAATGCTAATGATGATGTGAATTCTCCAGCCTCTTCTTCACCGTCTAGGTCTCGATCGGTTTCACCGCCTCCGTCGTTCGAAGCTGCTGGTGGTGGTGGTGGTGGTCGTGGCGGTGTGTATAATTTGAGGTCGAGGAATACGGGTAAGAAGGAGGCGTCTTCTGGTAGTGGGAGGTCGGGTCGGGTTAGGACGTTTGCGGATCTGAATAATAATAAGAATTGTGATGATTGTGACTCGGAGAGTGATGAGGATGGGCCTCAGGAGTATTACACTGGTGGTCATAGGAGTGGACAGCTTGTTCAAGATCCATCGAAGCAAAATGATGTGGATTCACTGTTTGAACAAGCTAGACGAGCAGGAGCTGAAGATGGGACTCTTGATCAACACCAACCATCCTCAAGCTCCAGAAGCTTTTCTGGAAGAGGAAGATTACTATCTGGAGAGACACCATCAGCTGCCCCTCAGCAACCTGAACCTGAAGTCCACACCATCACTTTCTGGACCAATGGTTTTACTGTAAATGATGGCCCTTTGAGGATGCTGGAGGATCCTCAAAATGCATCTTTCTTGGAGAGCATAAGGAATTCGGAGTGTCCAGAAGAACTTAAGCCTGCTAGAGGAAGAGCTCCTGTTCAAGTTAGTCTTGTGAGGAAGATGGAGGAGTACCCTATCAAGAAACAACGCCAAGCTGCCTTTGCGGGGGTTGGTAGAACCTTAGGCTCCACCACTTCTGCAGAGGACACCACTGCTACTATCTCAGCCCCTACAAATGCTGCCCCAACTCCGTTTGTGGGCCTAGTTGTTGATGACACATTACCCTCTACATCTATTCAGCTGAGATTGGGTGATGGGACCCGTATGGTTTCCCGGTTCAATCTCCACCACACTGTAAGCAATATCCGTTCTTTCATTGATGCATCAAGACCAGGTGGGCCCAGGGCTTATCAGCTATTGACTATGGGGTTCCCTCCAAAGCAGCTCAACGATTTGAACCAGACGATTCAAGAGGCTGGGTTAGCCAATTCTGTTGTCATCCAGAAACTCTAA 1254 48.72 MAENQANHSDLITSFTEITSSSIEEATFFLESHNFDLDSAVSTFFETTTTTTAVPTNPNFQQNDANANANANDDVNSPASSSPSRSRSVSPPPSFEAAGGGGGGRGGVYNLRSRNTGKKEASSGSGRSGRVRTFADLNNNKNCDDCDSESDEDGPQEYYTGGHRSGQLVQDPSKQNDVDSLFEQARRAGAEDGTLDQHQPSSSSRSFSGRGRLLSGETPSAAPQQPEPEVHTITFWTNGFTVNDGPLRMLEDPQNASFLESIRNSECPEELKPARGRAPVQVSLVRKMEEYPIKKQRQAAFAGVGRTLGSTTSAEDTTATISAPTNAAPTPFVGLVVDDTLPSTSIQLRLGDGTRMVSRFNLHHTVSNIRSFIDASRPGGPRAYQLLTMGFPPKQLNDLNQTIQEAGLANSVVIQKL 417
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aary5g02899 417 MobiDBLite consensus disorder prediction 52 91 - -
Aary5g02899 417 ProSiteProfiles UBX domain profile. 339 416 IPR001012 GO:0005515(InterPro)
Aary5g02899 417 Pfam UBA-like domain 10 47 - -
Aary5g02899 417 FunFam Plant UBX domain-containing protein 4 293 417 - -
Aary5g02899 417 SUPERFAMILY UBA-like 6 46 IPR009060 GO:0005515(InterPro)
Aary5g02899 417 FunFam UBX domain-containing protein 1 228 290 - -
Aary5g02899 417 Gene3D SEP domain 229 290 IPR036241 -
Aary5g02899 417 MobiDBLite consensus disorder prediction 190 229 - -
Aary5g02899 417 MobiDBLite consensus disorder prediction 52 173 - -
Aary5g02899 417 MobiDBLite consensus disorder prediction 195 229 - -
Aary5g02899 417 Pfam SEP domain 233 306 IPR012989 -
Aary5g02899 417 CDD UBX-UBXN2 345 416 - -
Aary5g02899 417 Gene3D - 293 417 - -
Aary5g02899 417 Gene3D - 5 47 - -
Aary5g02899 417 SMART faf-3 225 318 IPR012989 -
Aary5g02899 417 SMART ubx-3 338 417 IPR001012 GO:0005515(InterPro)
Aary5g02899 417 PANTHER UBX DOMAIN CONTAINING PROTEIN 5 416 - GO:0000045(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0007030(PANTHER)|GO:0031468(PANTHER)|GO:0043130(PANTHER)|GO:0043161(PANTHER)|GO:0061025(PANTHER)
Aary5g02899 417 Pfam UBX domain 342 416 IPR001012 GO:0005515(InterPro)
Aary5g02899 417 ProSiteProfiles SEP domain profile. 228 293 IPR012989 -
Aary5g02899 417 MobiDBLite consensus disorder prediction 115 141 - -
Aary5g02899 417 SUPERFAMILY Ubiquitin-like 301 415 IPR029071 -
Aary5g02899 417 SUPERFAMILY NSFL1 (p97 ATPase) cofactor p47, SEP domain 222 313 IPR036241 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aary5g02899 K14012 UBX domain-containing protein 1
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Event-related genes

Select Gene_1 Gene_2 Event_name
168206 Aary5g02899 Aary13g03446
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aary Aary-Chr13:207010598 Aary5g02899 Aary-Chr5:176829111 wgd
Aary Aary-Chr13:7499406 Aary5g02899 Aary-Chr5:176829111 wgd
Aary Aary-Chr5:1840217 Aary5g02899 Aary-Chr5:176829111 wgd