AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aary5g02909 ATGGCTACAAGTTCAGAAATCGGGCTTGCAGCAGCTATAAATATCCTCACTGCATTTGCCTTTTTGGTTGCTTTTGCTATACTTCGGATACAGCCGCTCAATGATAGAGTTTATTTTCCAAAATGGTATTTAAAGGGGTTAAGAAATAACCCACTTCAGTCAGGTGCATTTGTGAAGAAGTTTGTGAACTTGGACTTCAGATCATACTTGAGGTTTCTGAACTGGATGCCAGCTGCATTGCGTATGCCGGAGCCTGAGCTTATTGATCATGCTGGATTGGATTCCGTTGTTTACTTGAGAATTTACTTGACCGGACTCAAAATTTTTGTTCCAATTGCATGCCTTGCTTTCACAGTCATGGTGCCAGTCAATTGGACTAATCGGACTTTAGAGGAGTCTAAACTAACATACAGTGACATAGACAAGCTTTCAATATCCAACATTCCGAAAGGTTCAAACAGGTTCTTTACCCATTTAGTCATGGCTTACGCCTTTACATTTTGGACCTGTTATATTTTGAAGAGAGAGTATTCGATAATTGCAAAAATGAGGCTGCATTTTATTGCATCAGAACAACGGCGGCCTGATCAATTTACTGTGCTAGTGAGAAACGTGCCTCCAGACCCTGATGAGACGGTCAATGAACTTGTGGAGCATTTTTTTCTGGTCAACCATCCAGATCATTATTTATCTCATCAGGTTGTTTACAATGCAAACTTACTCTCCAAGTTGGTGAATGAGAAGAAAACAAAGAGGAATTGGCTTGACTATTATCAACTGAAATATGACAGAAGTAACCAGTCAAAAAGGCCATTGATGAAGACGGGTTATCTTGGCCTGTTCGGGAAGAGTGTGGATGCTATTGATTATTATCAATCTGAGATTGAGAAGCTATCGAAGGAAATATCTAAGGAGAGGGAAAAGATTATAACAAGCTCCAAATATGTTATGCCGGCTGCATTTGTTTCTTTTAAATCACGATGGGGTGCTGCAGTTTGTGCACAAACTGAACAATCCAGGAACCCGACTATTTGGCTAACCGAATGGGCCCCGGAACCCCGTGATGTTTATTGGGATAATCTTGCCATTCCATTTGTTTCACTCACAGTTAGAAGACTCATAATTGCTGTGGCATTTTTCTTCCTTACATTTTTCTTCATGATCCCGATAGCATTTGTACAGTCACTTGCAAATATCGATGGAATAGTGAAAGCAGCTCCTTTTATGCGAGGCATTATGGAAGTGGAATTTGTCAAATCATTCATTCAAGGTGTTCTGCCGGGAATTGCTCTGAAGATATTCCTTGTCTTTTTACCTTCAATCTTGATGATGATGTCTAAGTTTGAAGGGTTCACCTCCATATCGGCTCTAGAGAGAAGATCTGCATCAAGATATTATATTTTCCAATTTATCAATGTCTTTCTTGGGAGCATAATCACTGGGACTGCATTTCAACAGCTAAATACATTCATCCACCAGCCTGCAAACACTATCCCGGTGACAATTGGGGCATCTATACCGATGAAAGCAACCTTCTTTATAACTTATATCATGGTAGATGGATGGGCTGGAGTTGCTGGGGAGATTCTGAGGTTAAAACCACTAATATTCTACCACTTAAAGAACTTTTTCTTGGTGAAGACCGAAAAAGATAGGGAAGAAGCAATGAATCCTGGAAGTTTATCATTCAACACGGGTGAACCTCAAATCCAGCTTTATTTCTTACTTGGCCTTGTTTATGCTGTTGTCACCCCAATTCTGCTTCCATTCATAGTCGTATTCTTTGGGCTGGCTTATGTTGTATACCGTCATCAGATTATAAATGTGTATAATCAGCAGTATGAAAGTGCAGGATCTTTCTGGCCTGACGTTCATGGCCGCATAATTACTGCATTGATCGTTTCACAGTTGCTTCTAATGGGTCTGCTTAGCACTAAAGAAGCTGCCCAGTCAACTCCATTGCTTATTGCACTCCCTGTGCTTACCATATGGTTTCATAGATTCTGTAAGGGGCGGTACGAACCAGCTTTTATTAGGTTCCCTTTACAGGAGGCCATGATCAAAGACACACTAGAACGTGCAAGGGAGCCGTGCCTAAACGTCAAAGGTTATTTAGAAAATGCATATGTTCACCCAGTATTTTACAATGAAGACAGATGGGACGGTAGTGATGATGGGATCAGCGATGAGGAGTCACAGAAAGAACCACCTCTGGTTGCCACAAAGCGCCCTTCACGAACAAACACACCAGCAAGAAGTCAGCGAAGTGAGTCAACACGAACCTTGTTGGGTGTCACAGATGAAAGATCTTGCCCTTAA 2319 41.22 MATSSEIGLAAAINILTAFAFLVAFAILRIQPLNDRVYFPKWYLKGLRNNPLQSGAFVKKFVNLDFRSYLRFLNWMPAALRMPEPELIDHAGLDSVVYLRIYLTGLKIFVPIACLAFTVMVPVNWTNRTLEESKLTYSDIDKLSISNIPKGSNRFFTHLVMAYAFTFWTCYILKREYSIIAKMRLHFIASEQRRPDQFTVLVRNVPPDPDETVNELVEHFFLVNHPDHYLSHQVVYNANLLSKLVNEKKTKRNWLDYYQLKYDRSNQSKRPLMKTGYLGLFGKSVDAIDYYQSEIEKLSKEISKEREKIITSSKYVMPAAFVSFKSRWGAAVCAQTEQSRNPTIWLTEWAPEPRDVYWDNLAIPFVSLTVRRLIIAVAFFFLTFFFMIPIAFVQSLANIDGIVKAAPFMRGIMEVEFVKSFIQGVLPGIALKIFLVFLPSILMMMSKFEGFTSISALERRSASRYYIFQFINVFLGSIITGTAFQQLNTFIHQPANTIPVTIGASIPMKATFFITYIMVDGWAGVAGEILRLKPLIFYHLKNFFLVKTEKDREEAMNPGSLSFNTGEPQIQLYFLLGLVYAVVTPILLPFIVVFFGLAYVVYRHQIINVYNQQYESAGSFWPDVHGRIITALIVSQLLLMGLLSTKEAAQSTPLLIALPVLTIWFHRFCKGRYEPAFIRFPLQEAMIKDTLERAREPCLNVKGYLENAYVHPVFYNEDRWDGSDDGISDEESQKEPPLVATKRPSRTNTPARSQRSESTRTLLGVTDERSCP 772
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aary5g02909 772 Pfam Late exocytosis, associated with Golgi transport 9 176 IPR032880 -
Aary5g02909 772 MobiDBLite consensus disorder prediction 723 737 - -
Aary5g02909 772 PANTHER PROBABLE MEMBRANE PROTEIN DUF221-RELATED 10 727 IPR045122 GO:0005227(InterPro)|GO:0005227(PANTHER)|GO:0005886(PANTHER)
Aary5g02909 772 MobiDBLite consensus disorder prediction 742 765 - -
Aary5g02909 772 Coils Coil 288 308 - -
Aary5g02909 772 MobiDBLite consensus disorder prediction 723 772 - -
Aary5g02909 772 Pfam Calcium-dependent channel, 7TM region, putative phosphate 371 643 IPR003864 GO:0016020(InterPro)
Aary5g02909 772 Pfam Cytosolic domain of 10TM putative phosphate transporter 197 360 IPR027815 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aary5g02909 K21989 calcium permeable stress-gated cation channel
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Event-related genes

Select Gene_1 Gene_2 Event_name
168213 Aary5g02909 Aary13g03457
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aary Aary-Chr5:36664592 Aary5g02909 Aary-Chr5:177417052 dispersed
Aary Aary-Chr5:36677601 Aary5g02909 Aary-Chr5:177417052 dispersed
Aary Aary-Chr5:177417052 Aary6g03109 Aary-Chr6:197001176 dispersed
Aary Aary-Chr4:111896863 Aary5g02909 Aary-Chr5:177417052 transposed
Aary Aary-Chr13:207677706 Aary5g02909 Aary-Chr5:177417052 wgd
Aary Aary-Chr13:7774114 Aary5g02909 Aary-Chr5:177417052 wgd
Aary Aary-Chr13:2568665 Aary5g02909 Aary-Chr5:177417052 wgd