AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aary5g02914 ATGACACGCCTTCCCGTATACAAGCTTGTAGGGAGTACACCCGATGGGTCTGCTGAATTTAGTTATAAAGGTGACTTAATCGAGTATCCGGTGAAGGATAAAATTGCTTTTTTATTTCTTGTTAGAGATAACCTTCCTCTTGATTTCCTTTGGCATAATTTCTTTAAGAATGCAGATCCTGAGAATTTCACAATCTACATACACTCGAAGCCTGGTATTCTGTTCGACAAGTCTGTTACCAAATCAGCCTTCTTCTACAATCGGCAATTGAGAAACAGTGTTGAGGTTGGTTGGGGTACACCAACTATGGTTGAAGCAGAGAAGCTGTTGTTCAAGGCGGCGGCTCTTGATGATCCACAAAATTCGATATTTGTTCTCCTCTCTGACAGCTGTGTCCCTCTGTATAATTTCAGTTATATATACAAATATCTCGTTTCATCTCCACGAAGTTTTGTGGACAGCTTTATAGATGCCACGGATGATCCCAGGGAAAAACGCTATAATCCAGAGATGTCCCCTGACATACCCGAAGACAAATGGCGGAAAGGATCCCAGTGGATCACATTGGTCAGAAGGCATGCAGAGGTGGTTGCATATGATCAGGATGTTTTCCCAATCTTTGAGAAACACTGTAAGCGGCGACCGCTTCTAGACTTGAGCAAAGGAAATGAGTCTCTTATAGAACAACAGCAACACAATTGCATCCCAGATGAGCATTATGTGCCAACCTTACTTGCAATGCGTGGATATGAAGTTGAATTGGAGCGAAGAACATTAACTTATTCTTTATGGAACCAGTCTACTGAACCGATGAATACACAAGCCTGGCACCCTGTAACATTTGGTTTTGCAAGTGCCAGCCAAAAGAACATTCAAGATATTAAGGATATTGACCATGTTTATTTTAAGTCTGAAAACCGGACTGAATGGTGTGGTACTAGATCTAGTAGTGGTCCTTGTTATTTATTTGCTAGGAAATTTTCGCGTGGTGCAGCCATGCGACTTTTGACCAATGGGGTAGTTGGTCCCTATGATCCCAGCACATTGTTCTTAGACTCAACATAG 1065 41.97 MTRLPVYKLVGSTPDGSAEFSYKGDLIEYPVKDKIAFLFLVRDNLPLDFLWHNFFKNADPENFTIYIHSKPGILFDKSVTKSAFFYNRQLRNSVEVGWGTPTMVEAEKLLFKAAALDDPQNSIFVLLSDSCVPLYNFSYIYKYLVSSPRSFVDSFIDATDDPREKRYNPEMSPDIPEDKWRKGSQWITLVRRHAEVVAYDQDVFPIFEKHCKRRPLLDLSKGNESLIEQQQHNCIPDEHYVPTLLAMRGYEVELERRTLTYSLWNQSTEPMNTQAWHPVTFGFASASQKNIQDIKDIDHVYFKSENRTEWCGTRSSSGPCYLFARKFSRGAAMRLLTNGVVGPYDPSTLFLDST 354
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aary5g02914 354 PANTHER CORE-2-I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 31 336 IPR044174 GO:0016757(InterPro)
Aary5g02914 354 Pfam Core-2-I-Branching enzyme 35 294 IPR003406 GO:0016020(InterPro)|GO:0016757(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aary5g02914 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aary Aary-Chr5:177796168 Aary7g02286 Aary-Chr7:198818917 dispersed
Aary Aary-Chr13:207807999 Aary5g02914 Aary-Chr5:177796168 wgd
Aary Aary-Chr13:7938740 Aary5g02914 Aary-Chr5:177796168 wgd
Aary Aary-Chr13:2757058 Aary5g02914 Aary-Chr5:177796168 wgd
Aary Aary-Chr5:2472812 Aary5g02914 Aary-Chr5:177796168 wgd