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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aary5g02940 ATGTCGACAATCTTGCTGCTTCTATTCAAAACACCACTCCGCAAGGTATTAATAATAGGATTAGATCGAGCCAAGAGAGGACGTGCACCGTTGGTAGTTAAATCAGTTGGCGCAACTGTTTTTGTTATTATGATGTATAACGTTTATAGTGTTACCGAGATTCAAGGCAGGGTTGAGGAGGTTGCTGTTAATCCTACTGATCAGATTCTTTTGGCTTATCATATGCTTGAGGCTTCACTTATGGGATTCTCGCTTTTCCTGGCACTGATGATAGATAGGCTACATCATTACATCAGAGAACTTCGCATACTTAGAAAGACCTTGGAAGCTACAAAGAAACAAAACCGGACAGCTGAAGAAACCAAGGACTAA 372 40.86 MSTILLLLFKTPLRKVLIIGLDRAKRGRAPLVVKSVGATVFVIMMYNVYSVTEIQGRVEEVAVNPTDQILLAYHMLEASLMGFSLFLALMIDRLHHYIRELRILRKTLEATKKQNRTAEETKD 123
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aary5g02940 123 Coils Coil 94 121 - -
Aary5g02940 123 PANTHER BCR-ASSOCIATED PROTEIN, BAP 2 121 IPR008417 GO:0005783(InterPro)|GO:0005789(PANTHER)|GO:0006886(InterPro)|GO:0006888(PANTHER)|GO:0016020(InterPro)|GO:0070973(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aary5g02940 K14009 B-cell receptor-associated protein 31
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Event-related genes

Select Gene_1 Gene_2 Event_name
168224 Aary5g02940 Aary13g03478
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aary Aary-Chr5:178496544 Aary5g02940 Aary-Chr5:179454500 dispersed
Aary Aary-Chr5:179454500 Aary7g03136 Aary-Chr7:242298038 dispersed
Aary Aary-Chr5:179314046 Aary5g02940 Aary-Chr5:179454500 proximal