AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aary5g02942 ATGAAGCAATGGAGCATGAAGACTACATTGTTAATGTTACTAGCAATGTTGTATACTATAAATGGTGAAGACCCTTATAGATTCTTTGATTGGAATGTTACCTATGGTGATATTTACCCTCTTGGAGTTAAGCAACAGGGGATATTGATTAATGGGCAGTTTCCCGGGCCACAAATCGACTCGGTTACTAATGATAATGTGATTGTTAGTATTTACAACAACTTGGATGAACCATTCCTTATTACATGGAATGGGATACAGCAAAGGAGAAATTCATGGCAAGATGGAGTTTACGGCACGAATTGCCCAATCCCACCTGGCCAAAACTTTACCTACATTCTTCAAGTCAAGGATCAAATTGGTAGTTTCTTCTACTTTCCGTCACTTGGGATGCACCGGGCTGCTGGAGGTTATGGTGGCATTACAATCTCCAGCCGCCCGAGGATCCCTGTCCCATTCCCTCCACCCGCAGGAGATTTCACTATTCTCGCGGGTGATTGGTTTAAGCAAAACCACACTGATTTGAAAGCAATTTTAGATGGAGGGCATGATCTTCCATTCCCTGATGGTCTCCTTATTAATGGTCGTGGATCTAACGGATTTACATTCAATGTTGATCAAGGGAAAACTTATAGGCTGAGGATATCGAACGTGGGACTTACTACATCAATCAACTTCAGGATCCAGGGACATAAGATGTTGCTAGTAGAGACTGAAGGAACTCATACTCTTCAAAACACATACTCTTCTCTCGATATTCATTTGGGCCAATCGTACTCGGTTTTGATCACTGCTGATCAACCACCGGCAAATTACTATATGGTTGTCTCAACTAGATTCACCTCTCAAGTCCTTAGTGCTACCTCCATTCTTCGATACAGCAATTCCGGGGGATCTTTCCCAGCTCCTCCACCTGGAGGCCCCACCATCCAAATCGACTGGTCTTTGAATCAAGCCCGGTCTGTTAGGCAAAACTTGACAGCAAGTGGACCAAGGCCAAACCCCCAAGGCTCATACCATTACGGTATGGTTAACTTCACTCGAACCATAAGGCTCGCGAACTCTGCTCCTATTATAAATGGCAAGCAGAGATACGCTGTCAACAGTGTGTCGTTTATACCAGCAGACACACCTCTAAAGATTGCCGATTATTTCAAGATCTCGGGTGTGTTTTCCCTTGGAACCATTTCCGACAGCCCCAATGGTGGTGGTGGTTACCTTCAAACTTCCGTCATGGCTGCTGATTTCCGAGCATTTGCTGAAATTGTTTTTGAGAATTCAGAAGATACCGTGCAATCTTGGCACATTGATGGACACTTTTTCTTTGTTGTCGGGATGGATGGAGGGCCGTGGTCCGAAGCTAGCAGAACAAGCTACAATTTAAGAGACGGGATATCCCGCTCTACAGTTCAAGTATACCCAAGATCATGGACAGCATTGTATGTACCACTAGACAATGTTGGCATGTGGAACATAAGATCTCAGAATTGGGCTAGACAATACTTAGGTCAACAATTTTACCTTCGAGTTTATTCACCAGTAAATTCATGGAGAGACGAGTACCCGATCCCAAAGAATGCCATTACTTGCGGCCGAGCAAGTGGTCGCAAGACACGTCCTTTGTAA 1626 44.28 MKQWSMKTTLLMLLAMLYTINGEDPYRFFDWNVTYGDIYPLGVKQQGILINGQFPGPQIDSVTNDNVIVSIYNNLDEPFLITWNGIQQRRNSWQDGVYGTNCPIPPGQNFTYILQVKDQIGSFFYFPSLGMHRAAGGYGGITISSRPRIPVPFPPPAGDFTILAGDWFKQNHTDLKAILDGGHDLPFPDGLLINGRGSNGFTFNVDQGKTYRLRISNVGLTTSINFRIQGHKMLLVETEGTHTLQNTYSSLDIHLGQSYSVLITADQPPANYYMVVSTRFTSQVLSATSILRYSNSGGSFPAPPPGGPTIQIDWSLNQARSVRQNLTASGPRPNPQGSYHYGMVNFTRTIRLANSAPIINGKQRYAVNSVSFIPADTPLKIADYFKISGVFSLGTISDSPNGGGGYLQTSVMAADFRAFAEIVFENSEDTVQSWHIDGHFFFVVGMDGGPWSEASRTSYNLRDGISRSTVQVYPRSWTALYVPLDNVGMWNIRSQNWARQYLGQQFYLRVYSPVNSWRDEYPIPKNAITCGRASGRKTRPL 541
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aary5g02942 541 CDD CuRO-1-AAO-like-1 28 143 IPR034273 GO:0005507(InterPro)
Aary5g02942 541 SUPERFAMILY Cupredoxins 343 532 IPR008972 -
Aary5g02942 541 SUPERFAMILY Cupredoxins 153 333 IPR008972 -
Aary5g02942 541 FunFam Monocopper oxidase-like protein 157 331 - -
Aary5g02942 541 Pfam Multicopper oxidase 32 146 IPR011707 GO:0005507(InterPro)
Aary5g02942 541 Gene3D - 26 147 IPR008972 -
Aary5g02942 541 Pfam Multicopper oxidase 159 296 IPR001117 -
Aary5g02942 541 FunFam Monocopper oxidase-like protein 343 540 - -
Aary5g02942 541 SUPERFAMILY Cupredoxins 19 173 IPR008972 -
Aary5g02942 541 Gene3D - 342 538 IPR008972 -
Aary5g02942 541 Pfam Multicopper oxidase 376 513 IPR011706 GO:0005507(InterPro)|GO:0016491(InterPro)
Aary5g02942 541 Gene3D - 157 332 IPR008972 -
Aary5g02942 541 PANTHER MULTI-COPPER OXIDASE 27 507 IPR045087 GO:0016491(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aary5g02942 K19791 iron transport multicopper oxidase
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aary Aary-Chr17:146050916 Aary5g02942 Aary-Chr5:179692878 dispersed
Aary Aary-Chr5:3052482 Aary5g02942 Aary-Chr5:179692878 dispersed
Aary Aary-Chr5:178578529 Aary5g02942 Aary-Chr5:179692878 dispersed
Aary Aary-Chr5:179692878 Aary8g02670 Aary-Chr8:184154074 dispersed
Aary Aary-Chr13:209191183 Aary5g02942 Aary-Chr5:179692878 wgd
Aary Aary-Chr13:8476128 Aary5g02942 Aary-Chr5:179692878 wgd
Aary Aary-Chr13:3362300 Aary5g02942 Aary-Chr5:179692878 wgd
Aary Aary-Chr5:179692878 Aary9g02553 Aary-Chr9:155151667 wgd