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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aary5g03046 ATGTTATTTAGTTTCACACCATTTAAGGGCATGAAAACAAAAATCGTTCCATACTATTTGAACGGGAATCCATCAAGTCTTTTTTGTATCCTGCCACGAGATGATTCTTCACGCTTTTACCCACCTGGCAGTACTCCTGTTTACCTTAATGTGTACGATATATCAACCATCAACTCTTGTATATCATGGACAGGGATTGGTGCCTTTCACACGGGTCTAGAAGTTCATGGTGTGGAATATGGTTTTGGATGTCACCAAGAATCAGAAAGTGGGGTCTTTCAGATTGAGCCTAAAAAATGCCCCGGGTTCAAGTTTAGGGAGTCGATTTTAATGGGTACCACAAACTTAACCCCAAACCAAGTTCAAAGATTCATTGAGCTGCAATCCGATAACTATTATGGTGACACATACCACTTATTTCGGAAGAATTGCAATCATTTTTGTGAAGATATGTGTTACAAATTAACCGGGAACAAAATCCCCAGTTGGATCAACCGTCTAGCCAGGATAGGTTCATGTTGTCGTTGCATACTCCCAGTTGCCATAAAGGGTTCTGCTGTTAGAAATGAATCAAACTCTCAAGACTATGAAAAGAAGAGTTTAAGAAGCTCGTTTAGTTGTTTTACATCATTTTCATCTCATAATAAGTTGAGAAAAGTGTCGATATCTTCATTGTGTAGACATTCACTCTACAAAGGATGTCTTCCCCCATGGGAGTTGGAAGTAGACTCGCAAAGGCTATGTGACGATGAGGATGAGTAA 762 39.63 MLFSFTPFKGMKTKIVPYYLNGNPSSLFCILPRDDSSRFYPPGSTPVYLNVYDISTINSCISWTGIGAFHTGLEVHGVEYGFGCHQESESGVFQIEPKKCPGFKFRESILMGTTNLTPNQVQRFIELQSDNYYGDTYHLFRKNCNHFCEDMCYKLTGNKIPSWINRLARIGSCCRCILPVAIKGSAVRNESNSQDYEKKSLRSSFSCFTSFSSHNKLRKVSISSLCRHSLYKGCLPPWELEVDSQRLCDDEDE 253
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aary5g03046 253 PANTHER DESUMOYLATING ISOPEPTIDASE 43 201 IPR008580 GO:0008233(InterPro)|GO:0016579(PANTHER)|GO:0070646(PANTHER)|GO:0101005(PANTHER)
Aary5g03046 253 SMART DUF862-2a 45 183 IPR008580 GO:0008233(InterPro)
Aary5g03046 253 Gene3D PPPDE domains 40 198 IPR042266 -
Aary5g03046 253 ProSiteProfiles PPPDE domain profile. 45 182 IPR008580 GO:0008233(InterPro)
Aary5g03046 253 Pfam PPPDE putative peptidase domain 46 179 IPR008580 GO:0008233(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aary5g03046 K22763 deubiquitinase DESI2 [EC:3.4.19.12]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aary Aary-Chr5:185925086 Aary7g01275 Aary-Chr7:62403306 dispersed
Aary Aary-Chr11:41701317 Aary5g03046 Aary-Chr5:185925086 wgd
Aary Aary-Chr3:34114708 Aary5g03046 Aary-Chr5:185925086 wgd