Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aary5g03046 | ATGTTATTTAGTTTCACACCATTTAAGGGCATGAAAACAAAAATCGTTCCATACTATTTGAACGGGAATCCATCAAGTCTTTTTTGTATCCTGCCACGAGATGATTCTTCACGCTTTTACCCACCTGGCAGTACTCCTGTTTACCTTAATGTGTACGATATATCAACCATCAACTCTTGTATATCATGGACAGGGATTGGTGCCTTTCACACGGGTCTAGAAGTTCATGGTGTGGAATATGGTTTTGGATGTCACCAAGAATCAGAAAGTGGGGTCTTTCAGATTGAGCCTAAAAAATGCCCCGGGTTCAAGTTTAGGGAGTCGATTTTAATGGGTACCACAAACTTAACCCCAAACCAAGTTCAAAGATTCATTGAGCTGCAATCCGATAACTATTATGGTGACACATACCACTTATTTCGGAAGAATTGCAATCATTTTTGTGAAGATATGTGTTACAAATTAACCGGGAACAAAATCCCCAGTTGGATCAACCGTCTAGCCAGGATAGGTTCATGTTGTCGTTGCATACTCCCAGTTGCCATAAAGGGTTCTGCTGTTAGAAATGAATCAAACTCTCAAGACTATGAAAAGAAGAGTTTAAGAAGCTCGTTTAGTTGTTTTACATCATTTTCATCTCATAATAAGTTGAGAAAAGTGTCGATATCTTCATTGTGTAGACATTCACTCTACAAAGGATGTCTTCCCCCATGGGAGTTGGAAGTAGACTCGCAAAGGCTATGTGACGATGAGGATGAGTAA | 762 | 39.63 | MLFSFTPFKGMKTKIVPYYLNGNPSSLFCILPRDDSSRFYPPGSTPVYLNVYDISTINSCISWTGIGAFHTGLEVHGVEYGFGCHQESESGVFQIEPKKCPGFKFRESILMGTTNLTPNQVQRFIELQSDNYYGDTYHLFRKNCNHFCEDMCYKLTGNKIPSWINRLARIGSCCRCILPVAIKGSAVRNESNSQDYEKKSLRSSFSCFTSFSSHNKLRKVSISSLCRHSLYKGCLPPWELEVDSQRLCDDEDE | 253 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aary5g03046 | 253 | PANTHER | DESUMOYLATING ISOPEPTIDASE | 43 | 201 | IPR008580 | GO:0008233(InterPro)|GO:0016579(PANTHER)|GO:0070646(PANTHER)|GO:0101005(PANTHER) | |
| Aary5g03046 | 253 | SMART | DUF862-2a | 45 | 183 | IPR008580 | GO:0008233(InterPro) | |
| Aary5g03046 | 253 | Gene3D | PPPDE domains | 40 | 198 | IPR042266 | - | |
| Aary5g03046 | 253 | ProSiteProfiles | PPPDE domain profile. | 45 | 182 | IPR008580 | GO:0008233(InterPro) | |
| Aary5g03046 | 253 | Pfam | PPPDE putative peptidase domain | 46 | 179 | IPR008580 | GO:0008233(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aary5g03046 | K22763 | deubiquitinase DESI2 [EC:3.4.19.12] |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Aary | Aary-Chr5:185925086 | Aary7g01275 | Aary-Chr7:62403306 | dispersed | |
| Aary | Aary-Chr11:41701317 | Aary5g03046 | Aary-Chr5:185925086 | wgd | |
| Aary | Aary-Chr3:34114708 | Aary5g03046 | Aary-Chr5:185925086 | wgd |