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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aary7g02318 ATGAAGTTTAGCTCAATGAAATTGACTAGAAGTTTGTCGAAATTGCGGTGTGGTAAGGCTAATGACAATAACAAAAGTAAGAGCAACAAAGTTAGTCCTCAAGTAACCATTGATGCAGATGTCAAATGGGAAATGCGACCCGGTGGCATGCTTGTTCAAAAGAGAGATATTGGCGATGAAAGCGTCGAAGATGGGGTTATGGTCGTTAAAGTCGCAACATGTTCACAATTGCATGATATATCCATTCAAGCCACTTCTACTTTTGGAGAATTAAAGATGATATTATCGATGGTGACTAGCTTGGAGCCGAAAGAGCAAAGACTATTGTTCAAAGGGAAAGAAAGAGATGATGGAGAATATCTACACATGGTTGGTGTTAGAGACAAAGACAAGGTGTTGATGTTACAAGATCCTGCCACTAAAGAGAGGAAACTGGCCGCAAATGTCATGGTAGCTCCTTATCGTACGATTACTGTATAA 480 40.0 MKFSSMKLTRSLSKLRCGKANDNNKSKSNKVSPQVTIDADVKWEMRPGGMLVQKRDIGDESVEDGVMVVKVATCSQLHDISIQATSTFGELKMILSMVTSLEPKEQRLLFKGKERDDGEYLHMVGVRDKDKVLMLQDPATKERKLAANVMVAPYRTITV 159
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aary7g02318 159 ProSiteProfiles Ubiquitin domain profile. 67 135 IPR000626 GO:0005515(InterPro)
Aary7g02318 159 SUPERFAMILY Ubiquitin-like 61 138 IPR029071 -
Aary7g02318 159 PANTHER OS02G0597700 PROTEIN 2 158 - -
Aary7g02318 159 Pfam Ubiquitin family 70 135 IPR000626 GO:0005515(InterPro)
Aary7g02318 159 Gene3D - 66 135 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aary7g02318 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
5284 Aary11g02024 Aary7g02318
8936 Aary1g02494 Aary7g02318
171430 Aary15g02220 Aary7g02318
179429 Aary7g02318 Aary15g02220
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aary Aary-Chr7:200124876 Aary8g02179 Aary-Chr8:158364611 dispersed
Aary Aary-Chr1:148311853 Aary7g02318 Aary-Chr7:200124876 wgd
Aary Aary-Chr11:101740574 Aary7g02318 Aary-Chr7:200124876 wgd
Aary Aary-Chr15:172216987 Aary7g02318 Aary-Chr7:200124876 wgd
Aary Aary-Chr3:84422628 Aary7g02318 Aary-Chr7:200124876 wgd