AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aary7g02336 ATGGATAACACACCACTTTTCTTCACAATGTTTTTCACAATATATTTATCAGCACATTTCATCGTTTTCCGTAACTGGAGTCCGAAAACCAGACCAGAAGCCGCGAGCTGCCTTATCTCACTTGCACATGGCACACCCGCGGTCTTTCTTGCAATGCACGTAATCCTTTTTGACCCCAAAACACATACATTCGCGTCACAAAATAATATTTCACAAAACAATGTTCTTGAATATAGCATTGCATATTTCATTATGGACTTATGTCACTTGTTAATATTTGACCCAAAGGATGTACTTTTTATTTTTCACCATTTAGCTACACTTTTTGTTTTTGTCACGTGTCGATATTTAGTTTTTCACGGCGCGTATGGAGTTTTGGTTTTGCTAGTTTTAGCTGAGGTTACGAGTTTCTTACAAAATGTTTGGACTTTAGCTAGTGCGCAAAAGGAGGAAAATGAAGTTGCGGCGAGAGTGTTTTATAAGATATCTGTTCCCTTTTATTCATTGTATTCTGTTGTTAGAGGGTTTCTTGGGCCTTTGTTTGTTTATGAGATGGTTCTGTTTTATTCTAGTGGCGTGGCGGATAATGTTGTTCCTAAGTGGGTTTGGGTTTCTTGGATTTGTGTTGTGGTTATGGCGATTTCGGTTAGTATACTATGGGTGACTAATAATTGGGTCGCGCTGTATAGGGAAAGAATGTTTAAGGTTGAGAACGAGAAGAAGGTTAGTTAG 732 38.39 MDNTPLFFTMFFTIYLSAHFIVFRNWSPKTRPEAASCLISLAHGTPAVFLAMHVILFDPKTHTFASQNNISQNNVLEYSIAYFIMDLCHLLIFDPKDVLFIFHHLATLFVFVTCRYLVFHGAYGVLVLLVLAEVTSFLQNVWTLASAQKEENEVAARVFYKISVPFYSLYSVVRGFLGPLFVYEMVLFYSSGVADNVVPKWVWVSWICVVVMAISVSILWVTNNWVALYRERMFKVENEKKVS 243
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aary7g02336 243 ProSiteProfiles TLC domain profile. 29 238 IPR006634 GO:0016020(InterPro)
Aary7g02336 243 SMART lag1-27 29 233 IPR006634 GO:0016020(InterPro)
Aary7g02336 243 Pfam TLC domain 35 222 IPR006634 GO:0016020(InterPro)
Aary7g02336 243 PANTHER GLABROUS1 ENHANCER-BINDING PROTEIN-LIKE 2 3 238 IPR040327 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aary7g02336 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
5296 Aary11g02047 Aary7g02336
9540 Aary3g01756 Aary7g02336
171440 Aary15g02236 Aary7g02336
179439 Aary7g02336 Aary15g02236
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aary Aary-Chr7:200868851 Aary7g02336 Aary-Chr7:200890800 proximal
Aary Aary-Chr7:200890800 Aary7g02339 Aary-Chr7:200961078 proximal
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Aary3g01756 ACH,AST 330 572 GeBP Transcription Factor family AT5G14280 64.198 9.99e-105 312.0
Aary5g00173 . 66 368 GeBP Transcription Factor family AT1G61730 28.701 8.68e-23 96.3
Aary6g01690 ACH,AST 120 370 GeBP Transcription Factor family AT1G61730 29.183 3.12e-24 98.6
Aary7g02333 . 330 571 GeBP Transcription Factor family AT5G14280 56.79 2.36e-94 286.0
Aary7g02336 ACH,AST 330 571 GeBP Transcription Factor family AT5G14280 56.79 2.36e-94 286.0
Aary7g02339 . 330 571 GeBP Transcription Factor family AT5G14280 58.436 1.01e-95 289.0
Aary10g01432 . 34 423 GeBP Transcription Factor family AT5G28040 41.266 5.37e-77 242.0
Aary10g01441 . 79 423 GeBP Transcription Factor family AT5G28040 44.318 3.40e-80 251.0
Aary10g02155 . 70 368 GeBP Transcription Factor family AT4G25210 31.908 2.07e-26 105.0
Aary11g02047 ACH,AST 330 572 GeBP Transcription Factor family AT5G14280 65.021 1.09e-105 315.0
Aary13g00283 ACH 95 365 GeBP Transcription Factor family AT4G25210 29.091 1.20e-22 95.1
Aary13g00543 ACH 66 368 GeBP Transcription Factor family AT1G61730 28.28 2.64e-23 97.8
Aary14g01966 ACH,AST 120 370 GeBP Transcription Factor family AT1G61730 29.183 3.63e-24 98.6
Aary15g02236 ACH,AST 330 571 GeBP Transcription Factor family AT5G14280 58.436 2.21e-96 291.0