AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aary7g02338 ATGGCGAAAAAGGATATGTTTCCGGACGCGTATTCGGGTGGAGGATATCCTCCGAATTACGAATCGGAAGGTTCGGGGTGTTCGGGACATAATAATAATGATGATATGGATAGTGGAGTTAGGAGGAAATGGATTAAGTTAAGTTCGAGTGTGCACGATGGATTTGGTGTGCCTGTGCATGTTGTTTCGATGGCGAAGATGTCGAATGTGGAGAAAAAGAAGTGGTTGTTTAGGTTGAGAGGCGAGCTTGATCAGGTTCGGTTGTTGAAAAGGAAAGTTGATGCGGGTGAGGGTCAAGCTCGTGCTGTGGCCATGTCGAGTTCGAATGATGTTTATGGGATGAGTGGGAATGGGAGGAAAGTGGCAGGCCCGGGGAAAAGGGCTGATCAGAAGAAGAATAAGGCTGGGCCGGCTCATCGGGGTTCTATGGGGAAGTTTCAATCTATCGTTGAGTCGAGTACGGGTGCGGGGACGTTTACTCCGATATTGAAGAAACAATGTCAGGATTTGTTGAAGAAGTTGATTACTCATGTACATGGGTGGGTGTTTAATAAACCGGTTGATACTGTGGCGTTGAATTTACCCGATTATTTTGACGTTATTAAGAATCCCATGGATTTAGGGACGATAAAAGGAAAACTTAGTTCAGGGAAATATTCGAGTCCGCTTGAATTTGCTGCCGATGTGAGACTGACGTTTTCCAATGCCATGACTTATAATCCCCCCGGAAACGATGTTCATATAATGGCGGATGTTCTTAATAAATTTTTTGAGCTAAGATGGAAATCTATCGAAAAGAAACTTCCCACGACTGGTCCTCAACAACCACCGGTTCATGAAGTGATTGATTTGGCTAAGCCGATTCCTTCTTCGAAGAAAAGAAAAATTACGTCAATACAACAAGAACCGTTGCCATTACCGGAGCCTGTTAAGTTGGTGATGAGCAATGAAGAAAAGCATAATTTAAGTAGGGAGTTGGAAGCTCATTTGGGTGATTTGCCAGACAATATTATTGACTTTTTGAGAGAACATAGCTCGAATGGGAATGATGCTGCCGAGGATGAAATAGAAATTGATATCGATGATCTCAAGGACGAAACCCTGTTCAAGCTACGCAAGATGTTGGATGACCATGTGCGGGAGCTTCAAAGTAATGCCAAGGCAGAACCTTGTGTCATCGAGCTGCTACATGAATCAGGGCTTAGCAACTCCACGATGCAACTGTATAGAGGGAATGATCCCGAAGATGTAGATATTGGTGGGAATGAGCCCCCTGTTTCGAGCCATACCCCAGTTGGACAAGAAAAAGTAATAAACAAGAAAAGTGAGATGGGGACTACATCAAGAACCTCAAGTGATTCTAATTCTAGAGATGCATCTGAAAATGGGCATAACGATGTTAAAGCTTCTAGCCCACTAAAGGTGTCTCAGAACGATGTAGCTGGGGCTGATGTAGAGGACAAAGCAGGCACAAGTGACTTAATTGATAACCAGTCGGTTAGCGGATTGGACCAGGTTGAACACATGTCACAGCAGAAGCCAGGTTCTGTTGAATCTGATAGCCAGAAGGATGATGGGGATAGTGCTCCAAATTCGAGTCAACTTTCACCTGGAAAGTTGTACCGAGCTGCTCTTCTTAAAAACCGATTTGCTGATACAATTTTTAAGGCTCGTGAAAAGACGCTGAACCAGGTTGAAAAGGGGGACCCTGAGAAGCTTCGTCGTGAGAAAGAGGAACTAGAAAATCAAAAGAGAAAAGAAAAAGCCCGGTTACAAGCAGCAGCAGAGGCAGCAGAAAATGCTCGAAGGCGAGCTGAAGCTGAAGCTAAATTGGAAGCAAAGCGAAAGAGAGATCTCGAGAGGGAAGCAGCTCGGCAGGCATTATTGAAGATTGAAAAGACAGTTGAAATTGATGAGACTTCACGGTTTATTGAGGATTTGGAGATGTTGAGGTCTTCTAATCCCGAGCAGTTGGCGATCTCTGTAGATGAGAATAGTCCTGATCATGGATCATTAGATGCTTTAGGCAGTTTCAATTTTGGATCCAGCAATCCTTTGGAACAACTTGGGTTGTACATGAAAAGAGATGAACATGAAGAGGATGACGGTGAGCTTGAACCACCTAGCATTGTCCCTAGTGGAATGGATGTTGATGTGGAGGAAGGTGAAATCGATTAA 2178 44.08 MAKKDMFPDAYSGGGYPPNYESEGSGCSGHNNNDDMDSGVRRKWIKLSSSVHDGFGVPVHVVSMAKMSNVEKKKWLFRLRGELDQVRLLKRKVDAGEGQARAVAMSSSNDVYGMSGNGRKVAGPGKRADQKKNKAGPAHRGSMGKFQSIVESSTGAGTFTPILKKQCQDLLKKLITHVHGWVFNKPVDTVALNLPDYFDVIKNPMDLGTIKGKLSSGKYSSPLEFAADVRLTFSNAMTYNPPGNDVHIMADVLNKFFELRWKSIEKKLPTTGPQQPPVHEVIDLAKPIPSSKKRKITSIQQEPLPLPEPVKLVMSNEEKHNLSRELEAHLGDLPDNIIDFLREHSSNGNDAAEDEIEIDIDDLKDETLFKLRKMLDDHVRELQSNAKAEPCVIELLHESGLSNSTMQLYRGNDPEDVDIGGNEPPVSSHTPVGQEKVINKKSEMGTTSRTSSDSNSRDASENGHNDVKASSPLKVSQNDVAGADVEDKAGTSDLIDNQSVSGLDQVEHMSQQKPGSVESDSQKDDGDSAPNSSQLSPGKLYRAALLKNRFADTIFKAREKTLNQVEKGDPEKLRREKEELENQKRKEKARLQAAAEAAENARRRAEAEAKLEAKRKRDLEREAARQALLKIEKTVEIDETSRFIEDLEMLRSSNPEQLAISVDENSPDHGSLDALGSFNFGSSNPLEQLGLYMKRDEHEEDDGELEPPSIVPSGMDVDVEEGEID 725
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aary7g02338 725 MobiDBLite consensus disorder prediction 560 602 - -
Aary7g02338 725 MobiDBLite consensus disorder prediction 492 517 - -
Aary7g02338 725 MobiDBLite consensus disorder prediction 693 725 - -
Aary7g02338 725 ProSiteProfiles Bromodomain profile. 175 247 IPR001487 GO:0005515(InterPro)
Aary7g02338 725 Gene3D - 308 384 IPR038336 -
Aary7g02338 725 ProSiteProfiles NET domain profile. 304 386 IPR027353 -
Aary7g02338 725 Gene3D - 150 272 IPR036427 GO:0005515(InterPro)
Aary7g02338 725 SMART bromo-6 160 266 IPR001487 GO:0005515(InterPro)
Aary7g02338 725 MobiDBLite consensus disorder prediction 658 679 - -
Aary7g02338 725 Pfam Bromodomain 167 251 IPR001487 GO:0005515(InterPro)
Aary7g02338 725 MobiDBLite consensus disorder prediction 489 538 - -
Aary7g02338 725 MobiDBLite consensus disorder prediction 427 458 - -
Aary7g02338 725 CDD Bromo-plant1 165 261 IPR037377 -
Aary7g02338 725 PANTHER TRANSCRIPTION FACTOR GTE8 48 702 IPR052442 -
Aary7g02338 725 Pfam Bromodomain extra-terminal - transcription regulation 314 376 IPR027353 -
Aary7g02338 725 PRINTS Bromodomain signature 194 210 IPR001487 GO:0005515(InterPro)
Aary7g02338 725 PRINTS Bromodomain signature 228 247 IPR001487 GO:0005515(InterPro)
Aary7g02338 725 PRINTS Bromodomain signature 178 191 IPR001487 GO:0005515(InterPro)
Aary7g02338 725 PRINTS Bromodomain signature 210 228 IPR001487 GO:0005515(InterPro)
Aary7g02338 725 Coils Coil 570 622 - -
Aary7g02338 725 MobiDBLite consensus disorder prediction 405 477 - -
Aary7g02338 725 MobiDBLite consensus disorder prediction 117 142 - -
Aary7g02338 725 MobiDBLite consensus disorder prediction 1 35 - -
Aary7g02338 725 SUPERFAMILY Bromodomain 157 269 IPR036427 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aary7g02338 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
171441 Aary15g02237 Aary7g02338
179440 Aary7g02338 Aary15g02237
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aary Aary-Chr15:172701809 Aary7g02338 Aary-Chr7:200952870 dispersed
Aary Aary-Chr4:184261756 Aary7g02338 Aary-Chr7:200952870 dispersed
Aary Aary-Chr5:12018475 Aary7g02338 Aary-Chr7:200952870 dispersed
Aary Aary-Chr7:200952870 Aary7g02672 Aary-Chr7:220266130 dispersed
Aary Aary-Chr7:200892680 Aary7g02338 Aary-Chr7:200952870 tandem