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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aary9g02684 ATGGCGAGCGAAAAGGAACGAGAGACTCATGTTTACCTGGCAAAACTATCCGAACAAGCCGAACGTTACGAAGAGATGGTTGAAAATATGAAGAGTGTAGCAAAACTTGATGTTGACCTTAGTGTTGAAGAACGCAACCTACTTTCATTAGGATACAAGAACGTCATTGGTGCAAGGAGAGCCTCTTGGCGTATTATGTCTTCAATTGAACAAAAGGAGGAGTCGAAAGGAAACGAGAAACATGTCAATATAATAAAGGGATACCGCCAAAAGGTTGAAGAGGAGCTTTCCAAGATTTGCAATGATATTCTCGTGATCATTGATAAGCATCTTATACCCGCTTCGGGATCAGGAGAAGCTACTGTTTTCTACTATAAGATGAAAGGTGACTACTTCCGCTACCTTGCTGAGTTCAAGACAGACGAGGAGAGAAAGGAGGCTGCTGAGCAATCATTGAAGGGATATGAGGATGCTATTGCTGCTGCAAAAACAGAACTACCTTCAACCCACCCAATCCGTCTTGGTCTGGCTCTCAATTTCTCAGTCTTCTACTATGAAATTATGAATAATCCTGAGAGGGCCTGCCAATTGGCTAAACAAGCTTTTGATGAGGCAATTTCTGAGTTGGACTCCTTGAGTGAGGAATCATACAAAGACAGCACCTTGATCATGCAGCTATTGCGAGACAACCTCACTCTCTGGACCTCTGATTTGCCTGATGATGGAGGTGACGAGAATGTTAAAGGTACAGAGACCAAAGCAGCTGAACAAGAGCTTTGGTACTGTAGCAATGCTACAGTAACAGCCTGA 810 43.33 MASEKERETHVYLAKLSEQAERYEEMVENMKSVAKLDVDLSVEERNLLSLGYKNVIGARRASWRIMSSIEQKEESKGNEKHVNIIKGYRQKVEEELSKICNDILVIIDKHLIPASGSGEATVFYYKMKGDYFRYLAEFKTDEERKEAAEQSLKGYEDAIAAAKTELPSTHPIRLGLALNFSVFYYEIMNNPERACQLAKQAFDEAISELDSLSEESYKDSTLIMQLLRDNLTLWTSDLPDDGGDENVKGTETKAAEQELWYCSNATVTA 269
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aary9g02684 269 PRINTS 14-3-3 protein zeta signature 208 237 IPR000308 -
Aary9g02684 269 PRINTS 14-3-3 protein zeta signature 181 207 IPR000308 -
Aary9g02684 269 PRINTS 14-3-3 protein zeta signature 154 180 IPR000308 -
Aary9g02684 269 PRINTS 14-3-3 protein zeta signature 88 112 IPR000308 -
Aary9g02684 269 PRINTS 14-3-3 protein zeta signature 119 141 IPR000308 -
Aary9g02684 269 PRINTS 14-3-3 protein zeta signature 39 68 IPR000308 -
Aary9g02684 269 Coils Coil 138 165 - -
Aary9g02684 269 Coils Coil 195 215 - -
Aary9g02684 269 PIRSF 14-3-3 1 248 IPR000308 -
Aary9g02684 269 PANTHER 14-3-3 PROTEIN 6 240 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
Aary9g02684 269 Gene3D - 1 249 IPR036815 -
Aary9g02684 269 FunFam 14-3-3 protein epsilon 1 248 - -
Aary9g02684 269 SMART 1433-4 7 249 IPR023410 -
Aary9g02684 269 SUPERFAMILY 14-3-3 protein 6 237 IPR036815 -
Aary9g02684 269 Pfam 14-3-3 protein 13 235 IPR023410 -
Aary9g02684 269 Coils Coil 13 33 - -
Aary9g02684 269 ProSitePatterns 14-3-3 proteins signature 2. 217 236 IPR023409 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aary9g02684 K06630 14-3-3 protein epsilon
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Event-related genes

Select Gene_1 Gene_2 Event_name
5900 Aary12g02884 Aary9g02684
7743 Aary17g00893 Aary9g02684
8274 Aary17g02557 Aary9g02684
9790 Aary4g02892 Aary9g02684
10184 Aary9g00850 Aary9g02684
168489 Aary9g02684 Aary17g02557
170713 Aary9g02684 Aary17g00893
172833 Aary17g02557 Aary9g02684
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aary Aary-Chr9:158527450 Aary9g02953 Aary-Chr9:165914352 dispersed
Aary Aary-Chr12:194040558 Aary9g02684 Aary-Chr9:158527450 wgd
Aary Aary-Chr17:149550485 Aary9g02684 Aary-Chr9:158527450 wgd
Aary Aary-Chr17:79490040 Aary9g02684 Aary-Chr9:158527450 wgd
Aary Aary-Chr4:194651925 Aary9g02684 Aary-Chr9:158527450 wgd
Aary Aary-Chr9:84000423 Aary9g02684 Aary-Chr9:158527450 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Aary1g02773 ACH,AST 4 257 14-3-3 family AT3G02520 88.976 2.05e-165 456.0
Aary2g01102 AST 9 262 14-3-3 family AT1G35160 84.252 6.98e-157 434.0
Aary3g01140 ACH,AST 2 252 14-3-3 family AT5G38480 87.251 2.49e-166 458.0
Aary4g01867 AST 3 258 14-3-3 family AT1G78300 88.281 4.17e-167 460.0
Aary4g01905 AST 1 247 14-3-3 family AT5G65430 84.615 4.78e-159 439.0
Aary4g02892 ACH 6 256 14-3-3 family AT1G26480 83.399 7.13e-158 437.0
Aary7g00263 AST 8 249 14-3-3 family AT1G26480 57.438 1.36e-102 298.0
Aary7g02616 . 2 263 14-3-3 family AT2G42590 76.718 3.97e-150 417.0
Aary7g02657 . 2 263 14-3-3 family AT2G42590 76.718 3.97e-150 417.0
Aary7g02868 AST 2 263 14-3-3 family AT2G42590 76.718 3.97e-150 417.0
Aary7g02929 . 6 263 14-3-3 family AT2G42590 77.519 3.94e-148 412.0
Aary8g02452 . 16 111 14-3-3 family AT4G09000 44.33 1.05e-11 63.2
Aary9g00850 ACH,AST 6 264 14-3-3 family AT1G26480 83.012 5.78e-161 446.0
Aary9g02684 ACH,AST 5 256 14-3-3 family AT1G26480 82.143 3.20e-157 436.0
Aary9g02953 . 6 263 14-3-3 family AT2G42590 77.992 1.65e-148 414.0
Aary10g03544 AST 9 266 14-3-3 family AT1G35160 84.109 6.43e-157 435.0
Aary10g04729 ACH,AST 4 257 14-3-3 family AT3G02520 88.976 2.02e-165 456.0
Aary11g01333 ACH,AST 2 252 14-3-3 family AT5G38480 87.649 1.66e-167 461.0
Aary11g01385 ACH 2 252 14-3-3 family AT5G38480 87.649 1.66e-167 461.0
Aary12g01757 AST 3 258 14-3-3 family AT1G78300 88.281 7.38e-167 460.0
Aary12g01773 AST 1 247 14-3-3 family AT5G65430 84.615 4.78e-159 439.0
Aary12g02884 ACH 6 256 14-3-3 family AT1G26480 83.267 5.03e-158 438.0
Aary15g00211 . 8 249 14-3-3 family AT1G26480 58.264 8.47e-104 301.0
Aary15g02645 AST 2 263 14-3-3 family AT2G42590 76.718 3.97e-150 417.0
Aary16g02219 . 9 141 14-3-3 family AT1G78300 37.226 1.35e-10 59.7
Aary16g02220 . 9 141 14-3-3 family AT1G78300 37.226 1.35e-10 59.7
Aary16g02221 . 9 141 14-3-3 family AT1G78300 37.226 1.35e-10 59.7
Aary17g00893 ACH,AST 6 264 14-3-3 family AT1G26480 82.625 5.49e-158 438.0
Aary17g02557 ACH,AST 6 256 14-3-3 family AT1G26480 82.072 4.02e-157 436.0