AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr01g04129 ATGACGGTGAAGAAGAGATTTGTAAATGTTGCTTCAAAGCGTCATATTTCGCCCTTAGTTTTTAAGTTCATAATCTTATTAATAATATTATTTAGCCTCGTCGTGTTTTTCGGATTATTCTCTCAGTTTAAGCTTCAATCGGCGTCTAGTTTCACTGATTTCGGTTTCGATGATTCGCGTATTGTAAGTTATCGTATGAAGATTGCTTTCCTTTTCCTTGTTCGTGATAATCTCCCTCTCGATTTCCTTTGGCATAACTTTTTTAAGAATGCAGATCCTGAGAAATTTGCAATTTACATACACTCGAAGCCTGGTTTTGTGTTTGACGCGTCAACTACCAAATCAGTATTCTTCTACAACCGACAGTTGGAAAACAGTGTTGAGGTGGGTTGGGGTAAGCCGACAATGATTCAAGCAGAAAAGCTGCTGTTCAAGGCAGCCCTTGATGATCCAGACAATCATATCTTTGTTCTTCTCTCTGACAGTTGTGTCCCGCTATATAATTTCAGTTACATATACACATATTTAATATCATCTCCAAGAAGTTTCGTGGACAGCTTTATTCATGCCACGGAAAAACGTTATAATCCGGAGATGTCTCCTGACATACCTGAAGAAAAATGGCGGAAAGGATCCCAGTGGATCACATTGGTTAGAAGGCATGCAGAGGTGGTTGCATATGACCATGTTGTTTTCCCAGTATTTAACAAACACTGCAAGCGGCGGCCGCTTCTCGACTTGAGCAAGGGAAACGAGTCTCTTATAGAGCAGCAACAACACAATTGCATCCCAGATGAACATTATGTCCCCACCTTACTTGCAATGCGGGGATTTGAAGATGAATTGGTGAGAAGAACAATAACTTATTCTTTATGGAACCAGTCTACTGAAACTACTGAAACGATGAATACACTAGCCTGGCACCCTGTAACATTTGGTTATGCAACTGCTAGCCAGAAAAACATTCAAGATATCAAGGATATTGACCATGTTTATTTCCAGTATGAGAACCGGACTGAATGGTGCAGTCATGGTGCTAAATCTGGTAGCGGACCCTGTTACCTATTTGCAAGGAAGTTCACTCGTGGTGCAGCCATGCGCCTTTTGACGAACGGTGTCGTGGGTCCGTATGATCTCAACACATTGTTTTTAGATCCGTTATAG 1164 41.15 MTVKKRFVNVASKRHISPLVFKFIILLIILFSLVVFFGLFSQFKLQSASSFTDFGFDDSRIVSYRMKIAFLFLVRDNLPLDFLWHNFFKNADPEKFAIYIHSKPGFVFDASTTKSVFFYNRQLENSVEVGWGKPTMIQAEKLLFKAALDDPDNHIFVLLSDSCVPLYNFSYIYTYLISSPRSFVDSFIHATEKRYNPEMSPDIPEEKWRKGSQWITLVRRHAEVVAYDHVVFPVFNKHCKRRPLLDLSKGNESLIEQQQHNCIPDEHYVPTLLAMRGFEDELVRRTITYSLWNQSTETTETMNTLAWHPVTFGYATASQKNIQDIKDIDHVYFQYENRTEWCSHGAKSGSGPCYLFARKFTRGAAMRLLTNGVVGPYDLNTLFLDPL 387
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr01g04129 387 PANTHER CORE-2-I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 43 369 IPR044174 GO:0016757(InterPro)
Amtr01g04129 387 Pfam Core-2-I-Branching enzyme 68 325 IPR003406 GO:0016020(InterPro)|GO:0016757(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr01g04129 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Amtr Amtr-Chr1:63204013 Amtr01g04129 Amtr-Chr1:111208277 dispersed
Amtr Amtr-Chr1:111208277 Amtr04g00025 Amtr-Chr4:1719498 dispersed
Amtr Amtr-Chr1:111208277 Amtr08g03916 Amtr-Chr8:105666057 transposed