AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr01g04169 ATGATTGATTTCAGTAAAGCACGTTTTGATTTTGTGTTAAAGATGGGTACTAAGTTCAAAGCAAGCTTGCTCTTGTTGTGCATTTGCTTTCTTCACTCAGCTACCGCAACTTCGGGTCCTAATGATGGACTGGTTAGAATTGGACTTAAGAAGAGGAAAATTAACAACTTGAATCAAATTGGATATGTTGGATCTAATGAAGGGGGTAATTTAAGGGGTTCGGATACTGATGTTATCGCTCTAAGCAATTACATGGATGCACAGTATTATGGTGAGATTGGTATTGGTACTCCGCCTCAAAAGTTCACTGTGATTTTTGACACCGGTAGTTCTAATCTGTGGGTGCCTTCTGCAAAGTGCCACTTCTCAGTAGCTTGCCTTATGCACTCGAAGTATAAGTCTAGCGAGTCAAGTTCATATAAGAAAAACGGGAAATCTGCAGCAATTCAATATGGAACCGGTTCTATCTCTGGTTTTTTTAGCAAAGATGTTATCACGCTTGGTGATCTTGTTGTGAAAGAGCAAGATTTCATAGAGGCAACCAAAGAGCCTGGTGTCACTTTCGTAGCAGCCAAGTTTGACGGTATACTTGGTCTTGGGTTTCAAGAGATCTCTGTTGGGGATGCTGTTCCCGTTTGGTACAACATGGTGAAACAAGGTCTTGTTCAAGACCCTATATTTTCATTCTGGCTTAATCGCAATGTTGATGAGGTCGAAGGGGGTGAACTTGTGTTTGGCGGCCTTGACCTTAATCATTTCAAGGGCAAACACACATATGTCCCTATAACTGAGAAAGGCTATTGGCAGTTTGAAATGGGTGATGTCCTTATTGATGATAAACCAACCGGATTTTGTGACAAGGGTTGTGCAGCGATTGCTGATTCTGGAACTTCTTTGTTGGCTGGACCAACGGATATTATTAATCAAATCAATGAAGCCATTGGTGCTACTGGTATTATGAGCCAACAGTGCATGACATTTGTCAATCGGTTTGGAAAAACTATAATTGACATGCTACTAACTGAGACAAAACCTGAAAAAATCTGCTCTAAAATGAAGTTATGCGCCTTTGATGGTTCTCATGATACAAGCATGATAATTGAGAGTGTGGTTGACAAGAATAACGGAAAATCGTCTAGCATACATAATGAGATATGTAGTCTCTGTGAGTCGGCCGTTATCTGGGTTGAAAACAAAATAAAGCGAAATGAAACTGAAGAAGACATTATTAACCACGTTGATCAGCTGTGTGAACGGTTGCCAAATCCAATGGGACAATCTGGAGTCGATTGCAACAATCTTTCGTCGATGCCCCGTATTGCTTTTACCATTGGTGGTAAAACTTTTGACCTTTCCCCTGAACAGTATATCCTGAAAATTGGCAAGGGAGAAACAACCGAATGCATCAGTGGATTCACTCCTCTTGATGTGCCTCCTCCTCGTGGCCCCCTATGGATCCTGGGAGATATTTTTATGGGTAAATACCATACGGTGTTCGATTATGGTAAGCTACGAGTTGGATTTGCAGAAGCAGTTTAA 1539 41.13 MIDFSKARFDFVLKMGTKFKASLLLLCICFLHSATATSGPNDGLVRIGLKKRKINNLNQIGYVGSNEGGNLRGSDTDVIALSNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSAKCHFSVACLMHSKYKSSESSSYKKNGKSAAIQYGTGSISGFFSKDVITLGDLVVKEQDFIEATKEPGVTFVAAKFDGILGLGFQEISVGDAVPVWYNMVKQGLVQDPIFSFWLNRNVDEVEGGELVFGGLDLNHFKGKHTYVPITEKGYWQFEMGDVLIDDKPTGFCDKGCAAIADSGTSLLAGPTDIINQINEAIGATGIMSQQCMTFVNRFGKTIIDMLLTETKPEKICSKMKLCAFDGSHDTSMIIESVVDKNNGKSSSIHNEICSLCESAVIWVENKIKRNETEEDIINHVDQLCERLPNPMGQSGVDCNNLSSMPRIAFTIGGKTFDLSPEQYILKIGKGETTECISGFTPLDVPPPRGPLWILGDIFMGKYHTVFDYGKLRVGFAEAV 512
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr01g04169 512 ProSiteProfiles Saposin B type domain profile. 319 359 IPR008139 -
Amtr01g04169 512 ProSiteProfiles Peptidase family A1 domain profile. 89 509 IPR033121 -
Amtr01g04169 512 FunFam Vacuolar aspartic proteinase 400 511 - -
Amtr01g04169 512 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 291 302 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
Amtr01g04169 512 Gene3D - 319 421 - -
Amtr01g04169 512 Gene3D Acid Proteases 249 511 IPR021109 -
Amtr01g04169 512 ProSiteProfiles Saposin B type domain profile. 382 423 IPR008139 -
Amtr01g04169 512 Gene3D Acid Proteases 45 247 IPR021109 -
Amtr01g04169 512 SUPERFAMILY Acid proteases 25 511 IPR021109 -
Amtr01g04169 512 Pfam Saposin-like type B, region 1 385 421 IPR007856 GO:0006629(InterPro)
Amtr01g04169 512 SMART sapb-4 384 468 IPR008139 -
Amtr01g04169 512 SMART sapb-4 283 355 IPR008139 -
Amtr01g04169 512 FunFam Lysosomal aspartic protease 75 317 - -
Amtr01g04169 512 Pfam Eukaryotic aspartyl protease 88 511 IPR033121 -
Amtr01g04169 512 Pfam Saposin-like type B, region 2 322 355 IPR008138 -
Amtr01g04169 512 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 104 115 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
Amtr01g04169 512 PRINTS Pepsin (A1) aspartic protease family signature 291 302 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Amtr01g04169 512 PRINTS Pepsin (A1) aspartic protease family signature 241 254 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Amtr01g04169 512 PRINTS Pepsin (A1) aspartic protease family signature 485 500 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Amtr01g04169 512 PRINTS Pepsin (A1) aspartic protease family signature 95 115 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Amtr01g04169 512 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 27 511 IPR001461 GO:0004190(PANTHER)|GO:0004190(InterPro)|GO:0006508(PANTHER)|GO:0006508(InterPro)
Amtr01g04169 512 SUPERFAMILY Saposin 320 421 IPR011001 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr01g04169 K08245 phytepsin [EC:3.4.23.40]
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Event-related genes

Select Gene_1 Gene_2 Event_name
358169 Amtr01g04169 Amtr06g04368
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Amtr Amtr-Chr1:112186302 Amtr02g03944 Amtr-Chr2:79143591 dispersed
Amtr Amtr-Chr2:171386725 Amtr01g04169 Amtr-Chr1:112186302 transposed
Amtr Amtr-Chr1:112186302 Amtr06g05134 Amtr-Chr6:115714919 wgd