AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr01g04233 ATGCACCTTCTACTCCGTCCAACCCCCACACTCTGTTCCAGTTCCTACTCCGACCACCGTCCACCACCACACCACCACCACTTCCGTACATCCCACCACCATAACCTCCGTTACCTCAAATCCCTCGGTATCCTCCAACCAGACCTCACCATAACCCCATCACCCAACACTGTCTCTCATATCCTCTCAACCATACACTTCTTCAAGTCCAAAGGCTTTTCCGAACCCGACTTCCCCCGAATCGCCTACCTCTCCCCAAACCTCTTCACCGAAACATTCGACCCCGAATCCATCGAGCCGGTTTTTGAATTTTTAACGGTCGAATTATCCGCCTCAATGGAGGAAGCCCGCGGGTTGATCGTTAAACGCCCTCACATACTTGAATCAGACCCCGAATACTGCTTAAAACCGACACTCGAATATTTGAAAAGATTGGGGATTAGGAGGTTGAACATGCCAACAACTTTGAATGCTCATTTGTTGGATACAAGAGTGCATAAGTTTGAGGAGAAAATGAGGTTTTTGGAAGGAGTTGGGTTTTCGGTTGAGGAGGCGAGGCGGGTTTGTGGGCGGTTTCCGGCGATATTTGGGTATGGGATTGAGAATAATTTGAGGGCAAAGTATGTGTATTTGGTGAGGGAGATGAGGAGGGATGGTAGGGAGGAAGTGAATAAGTTTCCGCAGTATTTTGGGTTTAGTTTGGAGAAGAGGATAAAGGTTAGACATTTGCATTTGAAACAAAGAAATGTTGATGCTCAGGTTCCATTGAATAGGATGTTGTTGTGGAGTGATGATAGGTTTTATAAGAAATGGAAATGA 819 46.52 MHLLLRPTPTLCSSSYSDHRPPPHHHHFRTSHHHNLRYLKSLGILQPDLTITPSPNTVSHILSTIHFFKSKGFSEPDFPRIAYLSPNLFTETFDPESIEPVFEFLTVELSASMEEARGLIVKRPHILESDPEYCLKPTLEYLKRLGIRRLNMPTTLNAHLLDTRVHKFEEKMRFLEGVGFSVEEARRVCGRFPAIFGYGIENNLRAKYVYLVREMRRDGREEVNKFPQYFGFSLEKRIKVRHLHLKQRNVDAQVPLNRMLLWSDDRFYKKWK 272
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr01g04233 272 PANTHER CGI-12 PROTEIN-RELATED 56 270 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Amtr01g04233 272 SMART mt-12 79 112 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Amtr01g04233 272 SMART mt-12 186 218 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Amtr01g04233 272 SMART mt-12 153 181 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Amtr01g04233 272 SMART mt-12 117 148 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Amtr01g04233 272 SMART mt-12 220 251 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Amtr01g04233 272 Pfam mTERF 90 267 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Amtr01g04233 272 Gene3D Transcription termination factor 3, mitochondrial 30 272 IPR038538 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr01g04233 K15031 mitochondrial transcription termination factor family protein
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Amtr mTERF 3.4e-32 No_clan TR mTERF