AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr01g04234 ATGGCTGAAAATATAATACAGAGGTTAGAGGCAGCCGTAACGCGTCTCGAAATCTTTTCCAACCGTTCTAGGCCACAAGCTGCCACAACACTCGACGCCACATCAGCCATATCTGAACCGTCGATCGTCGCATTCGACGATCTGATCACCGAATATGTCGATAAGGTCTCCGGTTCAGCGGATAAGATCGGCGGACAGGTTAAGGATATTACGAGTATTCTTAAAGAAGCGTTTTCTGCACAGAAGGAGCTTCTTGTTCAAATCAAACAAACTCAGCAACCTGATGCTGCAGGAATGGCGGAATTTTTCAGACCATTAAATGAAAAACTAAGTGAAGCAACTAGAATGACAGAAGGACCCCGTTCTGATTTCTTCAACCACTTAAAATCTGTTGCTGAAAGTCTGACCGCTTTAGCATGGATTGCATATGCAGGGAAAAATTGCGGAATGAGCATGCCTATTGGACATGTTGAAGAATGTTGGCAGTCAGCTGAGTTTTACAATAACAAGGTTCTTGTAGAATACAGAAATAAAGATTCAAGTCATGTGGAATGGGCAAAAGCTCTCAAGGAACTTTATGTACCAGGCTTAAGGGATTATGTAAAGAGTCACTATCCTTTGGGACCCGTATGGAGTGCAACCGGGGTAACTGTATCTGCTCCATCAAAGTCCTCTACACCAGGTGCTCCTGCTGCTCCAAATCCCCCGCCAGCTTCGCTTGCCAGTTCATCATCTTCTTCATCATCTTCATCCCGTCCACAACAAGGAATGTCTGCAGTTTTTCAAGAAATTAGTTCAAAGCCCGTTACTGCTGGATTAAGAAAAGTTACAGATGACATGAAGACGAAAAACCGCACAGATAGAGCAGGATTTGTGAGTTCTGGAGAAAAAGAACCCCGCAAGAGTGTGCCACCAGCTGCTAAAGTTGGTCCTCCAAAACTTGAGCTCGTAATGGGTCGCAAATGGGTTGTTGAGAATCAAATTGGTGTGAAAGATTTGTCTATTGATGAGTGTGATCCAAGGCAGACAGTTTATATTTATGGATGCAAAGATTCAGTTCTTCAGATAAAAGGGAAAGTTAACAACATAACTGTTGACAAATGCACAAAAATGGGTGTTATATTTACGGACGTTGTAGCTGCTTTTGAGATTGTTAATTGCAGCAGCCTTGAGGTGCAATGCCAGGGTTCAGCCCCTACCATTTCAATAGACAACACAGCAGGTTGTCAGCTGTACTTGAGCAAAGATTCTCTAGAATCTTCTATCACAACTTCCAAGGCAAGTGAAGTTAATGTGATGGTACCTGCCCAAGATCCTGATGCGGATATGGTCGAACATCCTATGCCACATCAGTACATTCACACTTACCAAGATGGCCACTTTGTTACAACCCCCGTCTCTCACTCTGGAGCGTAA 1416 43.64 MAENIIQRLEAAVTRLEIFSNRSRPQAATTLDATSAISEPSIVAFDDLITEYVDKVSGSADKIGGQVKDITSILKEAFSAQKELLVQIKQTQQPDAAGMAEFFRPLNEKLSEATRMTEGPRSDFFNHLKSVAESLTALAWIAYAGKNCGMSMPIGHVEECWQSAEFYNNKVLVEYRNKDSSHVEWAKALKELYVPGLRDYVKSHYPLGPVWSATGVTVSAPSKSSTPGAPAAPNPPPASLASSSSSSSSSSRPQQGMSAVFQEISSKPVTAGLRKVTDDMKTKNRTDRAGFVSSGEKEPRKSVPPAAKVGPPKLELVMGRKWVVENQIGVKDLSIDECDPRQTVYIYGCKDSVLQIKGKVNNITVDKCTKMGVIFTDVVAAFEIVNCSSLEVQCQGSAPTISIDNTAGCQLYLSKDSLESSITTSKASEVNVMVPAQDPDADMVEHPMPHQYIHTYQDGHFVTTPVSHSGA 471
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr01g04234 471 SUPERFAMILY C-terminal domain of adenylylcyclase associated protein 311 470 IPR036223 -
Amtr01g04234 471 ProSiteProfiles C-CAP-cofactor C-like domain profile. 311 448 IPR017901 -
Amtr01g04234 471 MobiDBLite consensus disorder prediction 238 258 - -
Amtr01g04234 471 FunFam Adenylyl cyclase-associated protein 41 216 - -
Amtr01g04234 471 MobiDBLite consensus disorder prediction 217 258 - -
Amtr01g04234 471 MobiDBLite consensus disorder prediction 272 309 - -
Amtr01g04234 471 MobiDBLite consensus disorder prediction 274 295 - -
Amtr01g04234 471 Gene3D - 310 470 IPR016098 -
Amtr01g04234 471 SUPERFAMILY N-terminal domain of adenylylcyclase associated protein, CAP 41 236 IPR036222 -
Amtr01g04234 471 Gene3D - 41 216 IPR036222 -
Amtr01g04234 471 ProSitePatterns CAP protein signature 1. 5 17 IPR018106 -
Amtr01g04234 471 SMART carp 387 424 IPR006599 -
Amtr01g04234 471 SMART carp 349 386 IPR006599 -
Amtr01g04234 471 FunFam Adenylyl cyclase-associated protein 310 470 - -
Amtr01g04234 471 Pfam CAP, N-terminal domain 45 207 IPR053950 -
Amtr01g04234 471 Pfam Adenylate cyclase associated (CAP) C terminal 311 468 IPR013912 GO:0003779(InterPro)|GO:0007010(InterPro)
Amtr01g04234 471 Pfam CAP N-terminal conserved motif 3 17 IPR013992 GO:0003779(InterPro)|GO:0007010(InterPro)
Amtr01g04234 471 PANTHER ADENYLYL CYCLASE-ASSOCIATED PROTEIN 3 469 IPR001837 GO:0003779(PANTHER)|GO:0003779(InterPro)|GO:0005737(PANTHER)|GO:0007010(InterPro)|GO:0007015(PANTHER)|GO:0008179(PANTHER)|GO:0019933(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr01g04234 K17261 adenylyl cyclase-associated protein
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Event-related genes

Select Gene_1 Gene_2 Event_name
10391 Amtr01g04234 Amtr02g02804
358174 Amtr01g04234 Amtr06g04312
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Amtr Amtr-Chr1:114133265 Amtr02g02804 Amtr-Chr2:62789395 wgd
Amtr Amtr-Chr1:114133265 Amtr06g04312 Amtr-Chr6:95677170 wgd