Gene detail

Gene Search

Species

Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amtr01g04285	ATGGCCAAAAAGCCTGTTGCCTTCTTTGCATTTCTTCTGCTTCTCTTCGTTCTTGCAATCTCAGAAATCGGATCCGTGAACGGAGAATTATGTGAGAAGGCAAGCCAGACATGGTCTGGAAGTTGCGGCAACACAAGACACTGTGACGACCAGTGCAAGTCTTGGGAGGGTGCAGCCCATGGAGCTTGTCACGTGCGCGGTGGGAAACACATGTGCTTCTGCTACTTCAACTGTCCGAAAGCCCAAAAGCTGGCTCAGGATAAACTCAGAGCAAAAGAGCACACCAAGGAGAAGATTGAAGCTGAAAAGCCTCCAATTACTTTGTTACCTTCCCCTTATGCTGAAAAACCATACCTTCCACCTCATTGA	369	48.24	MAKKPVAFFAFLLLLFVLAISEIGSVNGELCEKASQTWSGSCGNTRHCDDQCKSWEGAAHGACHVRGGKHMCFCYFNCPKAQKLAQDKLRAKEHTKEKIEAEKPPITLLPSPYAEKPYLPPH	122

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amtr01g04285	122	Coils	Coil	82	102	-	-
	Amtr01g04285	122	SUPERFAMILY	Scorpion toxin-like	29	78	IPR036574	-
	Amtr01g04285	122	CDD	Knot1	40	75	IPR003614	GO:0006952(InterPro)
	Amtr01g04285	122	SMART	gth-4	30	78	IPR003614	GO:0006952(InterPro)
	Amtr01g04285	122	Pfam	Gamma-thionin family	30	78	-	-
	Amtr01g04285	122	Gene3D	-	30	78	IPR036574	-
	Amtr01g04285	122	PANTHER	DEFENSIN-LIKE PROTEIN 1	1	78	-	GO:0006952(PANTHER)
	Amtr01g04285	122	MobiDBLite	consensus disorder prediction	95	122	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amtr01g04285	-	-

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Amtr	Amtr-Chr1:114942262	Amtr01g04285	Amtr-Chr1:115729251	dispersed
	Amtr	Amtr-Chr1:115354111	Amtr01g04285	Amtr-Chr1:115729251	dispersed
	Amtr	Amtr-Chr1:115366980	Amtr01g04285	Amtr-Chr1:115729251	dispersed
	Amtr	Amtr-Chr1:115729251	Amtr10g04230	Amtr-Chr10:98474690	dispersed
	Amtr	Amtr-Chr1:115503599	Amtr01g04285	Amtr-Chr1:115729251	tandem

Gene Family Members

Select	Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amtr01g04259	.	1	78	Plant Defensins gene family	AT1G19610	35.897	3.26e-10	50.4
	Amtr01g04262	.	11	78	Plant Defensins gene family	AT1G19610	39.706	3.81e-12	55.5
	Amtr01g04264	.	1	78	Plant Defensins gene family	AT1G19610	50.0	9.29e-25	87.4
	Amtr01g04270	.	3	78	Plant Defensins gene family	AT1G19610	43.59	4.26e-18	72.4
	Amtr01g04279	.	3	78	Plant Defensins gene family	AT1G19610	50.0	3.24e-25	88.6
	Amtr01g04280	.	3	46	Plant Defensins gene family	AT1G19610	43.182	2.52e-08	45.1
	Amtr01g04284	.	1	78	Plant Defensins gene family	AT1G19610	50.0	4.18e-25	89.0
	Amtr01g04285	.	1	78	Plant Defensins gene family	AT1G19610	50.0	6.19e-25	88.6
	Amtr02g00868	WGDA	1	77	Plant Defensins gene family	AT2G02100	66.667	1.13e-33	108.0
	Amtr02g00870	.	1	77	Plant Defensins gene family	AT2G02100	61.538	1.06e-30	101.0
	Amtr05g00289	.	7	76	Plant Defensins gene family	AT1G61070	33.333	6.30e-12	53.5
	Amtr06g04791	.	3	78	Plant Defensins gene family	AT1G19610	48.684	2.86e-25	87.8
	Amtr07g01071	.	3	78	Plant Defensins gene family	AT1G19610	45.679	2.02e-21	78.2
	Amtr08g05293	.	1	73	Plant Defensins gene family	AT5G63660	60.811	3.64e-26	89.7
	Amtr09g03338	WGDA	1	77	Plant Defensins gene family	AT2G02120	61.538	7.37e-31	101.0
	Amtr10g04230	.	3	78	Plant Defensins gene family	AT1G19610	44.737	2.25e-19	76.6