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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr01g04416 ATGGAGACTCAGCAAATGGTTTTGCAAATCAAAGCTCCCAAGCCTAAGCGAAGGGTTACAATAGATGAGAATTGTGATCCTCAATCCAAATCTGCTGCCATTAATCGTGCCACTGAGGTTCAAGCAAGCCTTCCACTCGAGTTCCCGAGTTTTGTTAAGCCTATGCGTCCCTCACATGTTACTGGCTGCTTTTGTTTGGGGCTTCCCAGGAAATTCTGTGATGCACATTTGCCGAAACAGGATGAAACAGTTGTGTTGGTGGATGAAGATGATCAAGAATTCAACACGAAGTATCTTTTTGACAAATGTGGATTGAGTGGTGGCTGGAGAGGGTTTTCGATTGGTCATAAATTGCGCGAGGGAGATGCTCTAGTTTTTCAACTGATTGACCGTTGCAAATTTAGGGTCTACATTGTGAGGATACACGGTTTAAATGAAGTTGACGGATCACTTGGCCTGGTACCTGTAGTTCCTTGTGGCATGAATTCGTATCTACATCAAATCAAATCTGGCTCAGGGAATCTCGAGAGAGCTGAAGATATGGACATAGATTTACATCACGAAAGTGTTCAAGATAAAGCGTTGGTAGTGTTTGATCAATCAGGAGACGAGTATGCAGATTCAGATGTTTCTGAAGGACTCAGATTCTCACAATCTGTTCTGGAGTTTAAAGAAATCAAGGGTATCGATGATTTCAGTATTGTCGTGGATGATCTGGTTATAGATTCTGAAATACCTAAGCATTTTCGAATCAAATACTATGAATTGTGTCATAGTCAAAAGATGTACATTCATGAAAACCTCTTAAAAGGTCTGAATGTTAAACTAGCCGTTGGGATCATTCTTGAAAGCGTTACAATCGCTGATGCGATCAGAGCTTGTAAAGTTGACGTTACTCGTGATGATCTTGACATATGGGATAAAACCCTCAAGGCGTTCGAAGATCTGGGTATGAAAGTTGGGTTTTTAAGGGCCCGAATCAGCAAGCTTGTTGGGCTTTTGTTTGAATCAACCGAGGTTTTGGAAGCAAAGAAGAATGAACAAGTGAAAGCAGAAGACGAGATGAGAATTATTAATAAAAAGCTTTGTGGGGTTAGAGAAGTGATCAAGAATCTTGATGCTGAGATTGAATCTCTGAAGCTAAAAGGCAAAAATCTTCAACTGGTTTTTAATAAAGAGGCTACTGCACCTTGGTGA 1197 40.77 METQQMVLQIKAPKPKRRVTIDENCDPQSKSAAINRATEVQASLPLEFPSFVKPMRPSHVTGCFCLGLPRKFCDAHLPKQDETVVLVDEDDQEFNTKYLFDKCGLSGGWRGFSIGHKLREGDALVFQLIDRCKFRVYIVRIHGLNEVDGSLGLVPVVPCGMNSYLHQIKSGSGNLERAEDMDIDLHHESVQDKALVVFDQSGDEYADSDVSEGLRFSQSVLEFKEIKGIDDFSIVVDDLVIDSEIPKHFRIKYYELCHSQKMYIHENLLKGLNVKLAVGIILESVTIADAIRACKVDVTRDDLDIWDKTLKAFEDLGMKVGFLRARISKLVGLLFESTEVLEAKKNEQVKAEDEMRIINKKLCGVREVIKNLDAEIESLKLKGKNLQLVFNKEATAPW 398
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr01g04416 398 Gene3D - 27 142 IPR015300 -
Amtr01g04416 398 SUPERFAMILY DNA-binding pseudobarrel domain 48 144 IPR015300 -
Amtr01g04416 398 CDD B3-DNA 49 140 IPR003340 GO:0003677(InterPro)
Amtr01g04416 398 Pfam B3 DNA binding domain 51 140 IPR003340 GO:0003677(InterPro)
Amtr01g04416 398 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 15 141 IPR044837 -
Amtr01g04416 398 Coils Coil 369 389 - -
Amtr01g04416 398 SMART B3-2 51 142 IPR003340 GO:0003677(InterPro)
Amtr01g04416 398 Coils Coil 341 361 - -
Amtr01g04416 398 ProSiteProfiles B3 DNA-binding domain profile. 51 142 IPR003340 GO:0003677(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr01g04416 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
10406 Amtr01g04416 Amtr02g02895
358188 Amtr01g04416 Amtr06g04418
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Amtr Amtr-Chr1:118844544 Amtr07g05360 Amtr-Chr7:111488569 dispersed
Amtr Amtr-Chr1:118844544 Amtr02g02895 Amtr-Chr2:63858201 wgd
Amtr Amtr-Chr1:118844544 Amtr06g04418 Amtr-Chr6:97866487 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Amtr01g00142 . 641 680 B3 DNA Binding Superfamily AT5G60450 55.0 1.84e-07 46.2
Amtr01g00184 . 1 801 B3 DNA Binding Superfamily AT5G37020 63.98 0.0 958.0
Amtr01g00471 . 488 661 B3 DNA Binding Superfamily AT2G28350 44.253 9.45e-39 136.0
Amtr01g01626 ACH 112 227 B3 DNA Binding Superfamily AT3G19184 46.552 6.21e-28 110.0
Amtr01g01628 ACH 1 201 B3 DNA Binding Superfamily AT5G42700 33.333 4.74e-23 95.1
Amtr01g01629 . 163 222 B3 DNA Binding Superfamily AT3G19184 46.667 6.02e-14 62.4
Amtr01g03166 . 51 102 B3 DNA Binding Superfamily AT1G59750 63.462 2.31e-16 72.0
Amtr01g04416 ACH,WGDA 112 231 B3 DNA Binding Superfamily AT3G19184 55.0 1.12e-39 141.0
Amtr01g04420 . 71 199 B3 DNA Binding Superfamily AT5G42700 41.085 1.45e-26 103.0
Amtr01g05517 . 284 370 B3 DNA Binding Superfamily AT4G31615 25.287 5.20e-06 43.9
Amtr01g06582 . 52 848 B3 DNA Binding Superfamily AT5G62000 59.158 0.0 918.0
Amtr01g06714 . 246 387 B3 DNA Binding Superfamily AT4G32010 47.552 4.37e-36 134.0
Amtr01g07625 . 1 666 B3 DNA Binding Superfamily AT4G30080 53.792 0.0 683.0
Amtr01g07985 . 62 772 B3 DNA Binding Superfamily AT5G60450 53.548 0.0 717.0
Amtr01g08008 . 2 693 B3 DNA Binding Superfamily AT2G28350 52.817 0.0 665.0
Amtr01g08128 . 74 223 B3 DNA Binding Superfamily AT3G26790 46.0 1.55e-39 138.0
Amtr01g09003 . 1 794 B3 DNA Binding Superfamily AT5G37020 65.862 0.0 993.0
Amtr02g00443 . 22 98 B3 DNA Binding Superfamily AT1G16640 32.911 4.28e-06 43.9
Amtr02g02895 ACH 7 227 B3 DNA Binding Superfamily AT3G19184 60.268 2.19e-84 250.0
Amtr02g02896 ACH 8 221 B3 DNA Binding Superfamily AT3G19184 60.829 5.77e-80 239.0
Amtr02g04285 . 32 895 B3 DNA Binding Superfamily AT1G19850 59.795 0.0 971.0
Amtr02g04437 . 319 402 B3 DNA Binding Superfamily AT2G28350 53.488 3.41e-19 83.2
Amtr02g05712 . 168 289 B3 DNA Binding Superfamily AT1G05930 30.827 2.26e-12 63.5
Amtr02g05713 . 168 289 B3 DNA Binding Superfamily AT1G05930 30.827 2.29e-12 63.5
Amtr02g07549 . 139 214 B3 DNA Binding Superfamily AT2G46530 84.211 1.64e-44 149.0
Amtr02g07550 . 49 116 B3 DNA Binding Superfamily AT1G59750 55.714 1.88e-16 70.5
Amtr02g07595 . 18 124 B3 DNA Binding Superfamily AT3G18960 31.532 7.36e-11 59.7
Amtr02g07598 . 23 124 B3 DNA Binding Superfamily AT3G18960 33.962 1.76e-11 62.4
Amtr03g01568 . 15 473 B3 DNA Binding Superfamily AT1G19220 71.183 0.0 645.0
Amtr03g02450 . 1 662 B3 DNA Binding Superfamily AT4G30080 54.101 0.0 677.0
Amtr03g02757 . 2 391 B3 DNA Binding Superfamily AT2G28350 49.747 1.44e-117 357.0
Amtr03g02797 . 293 772 B3 DNA Binding Superfamily AT5G60450 44.841 2.22e-115 355.0
Amtr03g03751 . 52 838 B3 DNA Binding Superfamily AT5G62000 59.255 0.0 903.0
Amtr03g06938 . 4 592 B3 DNA Binding Superfamily AT4G30080 50.833 5.09e-172 499.0
Amtr04g00090 WGDA 5 660 B3 DNA Binding Superfamily AT4G32010 35.277 6.91e-126 392.0
Amtr04g00510 . 1 464 B3 DNA Binding Superfamily AT1G30330 86.412 0.0 829.0
Amtr04g03497 . 249 370 B3 DNA Binding Superfamily AT4G31615 21.311 1.53e-06 45.4
Amtr04g04155 . 13 583 B3 DNA Binding Superfamily AT2G46530 59.833 0.0 682.0
Amtr04g04279 . 168 289 B3 DNA Binding Superfamily AT1G05930 28.676 2.90e-08 52.4
Amtr04g04299 . 168 289 B3 DNA Binding Superfamily AT1G05930 30.469 6.37e-09 54.3
Amtr04g04805 . 217 355 B3 DNA Binding Superfamily AT1G59750 45.0 1.46e-31 120.0
Amtr04g05676 . 12 667 B3 DNA Binding Superfamily AT4G30080 55.051 0.0 673.0
Amtr04g05975 . 2 693 B3 DNA Binding Superfamily AT2G28350 53.857 0.0 635.0
Amtr04g06059 . 65 772 B3 DNA Binding Superfamily AT5G60450 53.962 0.0 706.0
Amtr05g00045 . 1 593 B3 DNA Binding Superfamily AT4G30080 52.855 0.0 550.0
Amtr05g00193 . 32 445 B3 DNA Binding Superfamily AT1G19850 72.705 0.0 610.0
Amtr05g02710 . 246 301 B3 DNA Binding Superfamily AT1G19850 78.571 3.23e-19 78.6
Amtr05g02840 . 62 772 B3 DNA Binding Superfamily AT5G60450 53.723 0.0 719.0
Amtr05g03665 . 53 844 B3 DNA Binding Superfamily AT5G62000 60.123 0.0 931.0
Amtr05g04201 . 1 226 B3 DNA Binding Superfamily AT3G19184 53.556 1.04e-72 221.0
Amtr05g05834 . 288 362 B3 DNA Binding Superfamily AT4G31615 28.0 5.20e-06 43.9
Amtr05g05970 . 168 289 B3 DNA Binding Superfamily AT1G05930 24.8 9.18e-06 44.7
Amtr05g06083 . 32 891 B3 DNA Binding Superfamily AT1G19850 59.055 0.0 952.0
Amtr06g01253 ACH 3 733 B3 DNA Binding Superfamily AT4G32010 46.096 0.0 651.0
Amtr06g01484 WGDA 65 683 B3 DNA Binding Superfamily AT3G24650 42.209 1.25e-121 375.0
Amtr06g01628 ACH 1 777 B3 DNA Binding Superfamily AT4G32010 48.485 0.0 695.0
Amtr06g02861 ACH,WGDA 92 211 B3 DNA Binding Superfamily AT5G42700 45.161 8.71e-32 119.0
Amtr06g04418 ACH,WGDA 108 230 B3 DNA Binding Superfamily AT3G19184 56.911 6.99e-44 153.0
Amtr06g04707 . 3 656 B3 DNA Binding Superfamily AT1G59750 67.477 0.0 861.0
Amtr06g05463 . 9 614 B3 DNA Binding Superfamily AT4G23980 58.282 0.0 677.0
Amtr07g00194 . 1 618 B3 DNA Binding Superfamily AT4G23980 57.337 0.0 669.0
Amtr07g04618 . 1 774 B3 DNA Binding Superfamily AT4G32010 49.692 0.0 691.0
Amtr07g05355 . 47 277 B3 DNA Binding Superfamily AT3G19184 31.169 1.52e-33 126.0
Amtr07g05359 ACH 115 236 B3 DNA Binding Superfamily AT3G19184 44.262 1.07e-35 132.0
Amtr07g05360 ACH 115 237 B3 DNA Binding Superfamily AT3G19184 50.407 1.54e-42 150.0
Amtr07g05999 . 288 368 B3 DNA Binding Superfamily AT4G31615 29.63 7.85e-06 42.7
Amtr08g00490 . 1 846 B3 DNA Binding Superfamily AT5G62000 58.207 0.0 943.0
Amtr08g02397 . 4 218 B3 DNA Binding Superfamily AT5G58280 55.405 5.50e-73 224.0
Amtr08g03138 . 1 808 B3 DNA Binding Superfamily AT5G37020 63.67 0.0 947.0
Amtr08g04029 . 12 313 B3 DNA Binding Superfamily AT3G26790 41.368 2.40e-62 199.0
Amtr08g04889 . 1 797 B3 DNA Binding Superfamily AT5G37020 58.164 0.0 845.0
Amtr08g05014 . 1 587 B3 DNA Binding Superfamily AT2G33860 47.913 1.66e-172 501.0
Amtr08g05090 WGDA 3 742 B3 DNA Binding Superfamily AT4G32010 32.91 2.06e-104 333.0
Amtr08g05336 WGDA 431 713 B3 DNA Binding Superfamily AT3G24650 56.552 8.98e-91 298.0
Amtr08g05521 . 53 199 B3 DNA Binding Superfamily AT3G19184 58.784 1.49e-51 166.0
Amtr09g03989 . 1 662 B3 DNA Binding Superfamily AT4G30080 54.559 0.0 659.0
Amtr09g04324 . 106 410 B3 DNA Binding Superfamily AT5G62000 43.59 1.09e-74 247.0
Amtr09g04524 . 288 368 B3 DNA Binding Superfamily AT4G31615 28.395 5.73e-06 43.1
Amtr10g00126 . 1 225 B3 DNA Binding Superfamily AT4G00260 23.707 1.58e-10 58.5
Amtr10g00345 . 167 289 B3 DNA Binding Superfamily AT1G05930 28.788 8.60e-06 44.3
Amtr10g00347 . 167 289 B3 DNA Binding Superfamily AT1G05930 28.788 8.84e-06 44.3
Amtr10g00348 . 167 289 B3 DNA Binding Superfamily AT1G05930 28.788 8.60e-06 44.3
Amtr10g00350 . 167 289 B3 DNA Binding Superfamily AT1G05930 28.788 8.84e-06 44.3
Amtr10g00358 . 167 289 B3 DNA Binding Superfamily AT1G05930 27.692 7.89e-08 51.2
Amtr10g01385 . 53 490 B3 DNA Binding Superfamily AT2G33860 53.915 6.86e-155 455.0
Amtr10g01869 . 167 289 B3 DNA Binding Superfamily AT1G05930 28.462 1.21e-08 52.4
Amtr10g01930 . 247 319 B3 DNA Binding Superfamily AT1G19850 65.753 5.52e-20 80.9
Amtr10g04162 WGDA 14 187 B3 DNA Binding Superfamily AT4G01580 26.519 2.00e-10 58.5
Amtr11g00990 . 7 616 B3 DNA Binding Superfamily AT4G23980 58.257 0.0 692.0
Amtr11g01965 . 1 478 B3 DNA Binding Superfamily AT5G20730 70.661 0.0 658.0
Amtr11g02583 . 57 451 B3 DNA Binding Superfamily AT1G19220 73.684 0.0 586.0
Amtr11g03682 . 10 488 B3 DNA Binding Superfamily AT1G19220 67.004 0.0 645.0
Amtr12g01190 ACH 1 672 B3 DNA Binding Superfamily AT4G32010 46.154 0.0 585.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Amtr B3 2.5e-15 CL0405 TF B3