AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr01g09522 ATGCCGGTAGCCCGACCCGAAACGTCGGATTCCAGGATCATTGCACACGTGGACATGGATTGCTTCTACGTTCAAGTGGAGCAACGTAAACAGCCTCATTTAAGAGGACAACCAACTGCTGTGGTTCAGTACAATTCTTGGAAAGGCGGCGGTCTGATTGCTGTCGGTTACGAAGCTAGGAAAGACGGTGTTAAACGTTCAATGAGAGGTGATGAAGCGAAGAAAGTTTGTCCCCAAATTCAGTTGGTTCAAGTTCCGGTGGCTCGTGGTAAAGCTGACTTGACCATATATAGGAATGCAGGTTCAGAGGTTGTTTCGATTCTTGCGAGGAAGGGGAGGTGTGAGCGCGCTTCGATTGATGAAGTGTATCTTGATCTAACTGAGGCTGCTGAGACAATGTTGAAAGAGACACCGTTAGAAAGCTTCGAAAATATCGATGAAGAAGTTCTTAAGTCACATGTTTTAGGGCTCAGTTTGAATGGAAATGATGAGAAAGAAATTGTGAGGGAATGGCTGACAAGAAGAGATGCGGATCACCGTGATAAACTGTTAGCATGTGGAGCTATTATTGTTGCTGAACTCCGGATGCAAGTTTTACGGGAGACTGAGTTTACATGTTCTGCAGGCATTGCTCATAACAAAATGCTGGCTAAACTAGCAAGTGGTATGAATAAACCAGCACAACAAACTATTGTCACTTTGGCATCAGTAAAAGGGCTTCTTGAATCTTTGCCTATAAAGAAAATGAAACAGCTTGGCGGGAAGCTTGGGAGTTCCTTACAAACTGAACTTGGAGTGAATACCGTTGGAGATCTGTTGCAGTTTTCTGTGGAAAAACTACAAGATCTTTATGGTTCTAATACAGGTACGTGGCTATGGAATATTGCAAGAGGTATTAATGGAGATGAAGTTGAGGGTCGTTTGCTTCCTAAAAGCCACGGGTCTGGGAAGACATTTCCTGGAGTTCGAGCCCTAAAAACTCTTGCTGCTGTTGAAAAATGGCTCAAAGAACTATGTGAAGAGTTAAGTGAACGATTACAGTTAGATCTAGAAACAAATAAACGAATTGCACATACACTTACTCTGCATGCTAATGCGTACAAGTCCACAGATACGGAATCACACAAAAAGTTCCCTTCTAAGTCATGCCCTTTGAGATACGGAGCGGGGAAGATTCTAGAAGATTCTGTAAATCTTTTCCAAGCTGGCTTACGTGAATTTCTAGGATCATATATGAATTCTGCCGATGGTGGTTGGGGCATTACGAATCTTTCTGTTACAGCCAGTAAAATTGTTGCTGTACCATCTGGAACTTGTTCAATCACGAAATACTTCCATGGTCAAGATCGGTTTCACGCTTCATTAGAACCATCTGATGAAAAGTTTGCACCAGAAGACGATAATTTGTCAACATCAATGACCGAAAGCCATTCAGCCTCTCATCAAACTGAAATTGGCGGGGAACAGCCTCCAATTACACAGGATACTTCCAGTTTTGACCAACATGAGACGACATGTAAAGATGAGGCTAGTGAAAATTGTTCAACTTCAAAACATCATGAACCACAGCCAAGGTTACCTGAAAAAGAAAGGAATACTAATGATGGAAAGCGATCATATGAGCAGAAAAGGAAAGCACCGAAAGAAAAGGGAACATCTTCCATCTTGCGATTTCTCCAACCCGCCTCCTGCTCTTCATCACATCAGGAAGCAAAATCTTTGTCATCAGGGGTACAAGAAGCATTCGGTATGGAGAGTGAGAGTTTGACAGAAAGTCAAAATAAACGAAGAACAGATTCATGGCGCTACAATGCAGATGATATAGACCAATCGGTGGTTGAAGAGTTGCCACCAGAATTACAGGAAGAAGTGCGTACATGGCTTCGACCTCAGAAGCAAGTTAAAGCGAACACAGAGAAACGAGGCTCTAGTATTGCTCATTATTTCTCCCCCAACAAAAACGAGCACACAAATCCTAAGAAATCCTAG 1989 42.68 MPVARPETSDSRIIAHVDMDCFYVQVEQRKQPHLRGQPTAVVQYNSWKGGGLIAVGYEARKDGVKRSMRGDEAKKVCPQIQLVQVPVARGKADLTIYRNAGSEVVSILARKGRCERASIDEVYLDLTEAAETMLKETPLESFENIDEEVLKSHVLGLSLNGNDEKEIVREWLTRRDADHRDKLLACGAIIVAELRMQVLRETEFTCSAGIAHNKMLAKLASGMNKPAQQTIVTLASVKGLLESLPIKKMKQLGGKLGSSLQTELGVNTVGDLLQFSVEKLQDLYGSNTGTWLWNIARGINGDEVEGRLLPKSHGSGKTFPGVRALKTLAAVEKWLKELCEELSERLQLDLETNKRIAHTLTLHANAYKSTDTESHKKFPSKSCPLRYGAGKILEDSVNLFQAGLREFLGSYMNSADGGWGITNLSVTASKIVAVPSGTCSITKYFHGQDRFHASLEPSDEKFAPEDDNLSTSMTESHSASHQTEIGGEQPPITQDTSSFDQHETTCKDEASENCSTSKHHEPQPRLPEKERNTNDGKRSYEQKRKAPKEKGTSSILRFLQPASCSSSHQEAKSLSSGVQEAFGMESESLTESQNKRRTDSWRYNADDIDQSVVEELPPELQEEVRTWLRPQKQVKANTEKRGSSIAHYFSPNKNEHTNPKKS 662
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr01g09522 662 FunFam DNA polymerase eta 21 88 - -
Amtr01g09522 662 FunFam DNA polymerase eta 304 432 - -
Amtr01g09522 662 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 309 433 IPR036775 GO:0003684(InterPro)|GO:0006281(InterPro)
Amtr01g09522 662 MobiDBLite consensus disorder prediction 501 551 - -
Amtr01g09522 662 Pfam impB-mucB-samB family 17 221 IPR001126 GO:0006281(InterPro)
Amtr01g09522 662 Pfam impB-mucB-samB family C-terminal domain 310 436 IPR017961 GO:0003684(InterPro)|GO:0006281(InterPro)
Amtr01g09522 662 PANTHER DNA POLYMERASE ETA 1 581 IPR052230 GO:0003887(PANTHER)|GO:0005634(PANTHER)|GO:0005657(PANTHER)|GO:0009314(PANTHER)|GO:0035861(PANTHER)|GO:0042276(PANTHER)
Amtr01g09522 662 MobiDBLite consensus disorder prediction 631 653 - -
Amtr01g09522 662 Gene3D - 246 302 - -
Amtr01g09522 662 Pfam DNApol eta-Rev1, HhH motif 244 299 - -
Amtr01g09522 662 FunFam DNA polymerase eta 89 232 - -
Amtr01g09522 662 MobiDBLite consensus disorder prediction 631 662 - -
Amtr01g09522 662 MobiDBLite consensus disorder prediction 467 500 - -
Amtr01g09522 662 FunFam Polymerase (DNA directed), eta 246 302 - -
Amtr01g09522 662 ProSiteProfiles UmuC domain profile. 14 253 IPR001126 GO:0006281(InterPro)
Amtr01g09522 662 Gene3D - 304 433 IPR036775 GO:0003684(InterPro)|GO:0006281(InterPro)
Amtr01g09522 662 Gene3D - 89 232 IPR043128 -
Amtr01g09522 662 MobiDBLite consensus disorder prediction 458 602 - -
Amtr01g09522 662 Gene3D - 21 88 - -
Amtr01g09522 662 MobiDBLite consensus disorder prediction 556 589 - -
Amtr01g09522 662 SUPERFAMILY DNA-RNA polymerases 8 304 IPR043502 -
Amtr01g09522 662 PIRSF DNA-pol-eta 6 484 - -
Amtr01g09522 662 PIRSF DNA-pol-eta 445 662 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr01g09522 K03509 DNA polymerase eta [EC:2.7.7.7]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Amtr Amtr-Chr1:122698549 Amtr01g09522 Amtr-Chr1:223311968 dispersed