AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr02g04086 ATGGCTGGGAGGAATCGTGGACCCCCGCTTCCGATGAAAGGTGTCCCACATGGTGGAATGCCGCTTATTCACGAGCCACCGTTTGGAAGGAATCTAGGCCCGATGCCTCACCCTGCCTTGCTTGAAGAGATGCGGGAAGCTGAGTTTGCAAGGAGTCATAGACCACTCCCGCCTCACCCTGCTATTTTTGAGGAACAGTTAGCGGCTCAACTTCAGGACATTCAGGGGCTGTTGGTTGATAACCAACGGTTTGCTGCAACCCATGTTGCACTTAAGCAGGAGTTAGAAGCGGCACAACATGAGCTTCAACAAAGCGATCATTTTGCTAGAAACTTACTCATGGAGAAGGATATGCAGATGAGGGAGTTGTATGAGAAGTCGGCGAAAATGGAACATGATCTTCATGGGGTTGAAGGCATGCGGGCTGAGCTTATGAAATTGCATGCTGATATTAAGGAATTGACTGCCACTCGTCAAAAGCTTACTGCGCAAGTTCAGGGTATGACCCAAGATTTTGCTAGAGCTAATGCTGAATTGCAGCAAGTTCCAGCACTCAAATCAGAAATCGGAGGGCTTAGGCAGGAACTGCAACGTATGAGGGCTGCAATTGAACAGGAGAAAAAGGGTCACGCAGAAAACTATGAGCATGGTCAAGTGATGGAGAAGAATTTACTCTCTATGGCTCGTGAATTGGAAAAGTTACGTGCTGAGATGGCTAATGCTGAAAAAAGGACACGTGCTGCAGCAGCAGCAGGGAATCCGAATCCTGGCTATAACACAAATTACGGCAATGTTGATGCTAGCTATGGAGTGAATCCTTATCCTGCAAATTACGGGATGAGTTCTACTAATCAAATGAATCCTGTACAGCCTGGTGCTGAAGGCTATCCTCAGTATGGACCTGGACCTGGATCATGGGGCACGTATGATATGCAACGGGCTCAAGGGCACAGATAA 957 47.96 MAGRNRGPPLPMKGVPHGGMPLIHEPPFGRNLGPMPHPALLEEMREAEFARSHRPLPPHPAIFEEQLAAQLQDIQGLLVDNQRFAATHVALKQELEAAQHELQQSDHFARNLLMEKDMQMRELYEKSAKMEHDLHGVEGMRAELMKLHADIKELTATRQKLTAQVQGMTQDFARANAELQQVPALKSEIGGLRQELQRMRAAIEQEKKGHAENYEHGQVMEKNLLSMARELEKLRAEMANAEKRTRAAAAAGNPNPGYNTNYGNVDASYGVNPYPANYGMSSTNQMNPVQPGAEGYPQYGPGPGSWGTYDMQRAQGHR 318
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr02g04086 318 Coils Coil 81 101 - -
Amtr02g04086 318 PANTHER PROTEIN FLX-LIKE 2 1 311 IPR040353 -
Amtr02g04086 318 MobiDBLite consensus disorder prediction 291 318 - -
Amtr02g04086 318 Coils Coil 217 251 - -
Amtr02g04086 318 Coils Coil 137 178 - -
Amtr02g04086 318 Coils Coil 193 213 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr02g04086 K27811 protein FLX/FLXL
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Amtr Amtr-Chr2:66590276 Amtr02g04086 Amtr-Chr2:81420488 dispersed
Amtr Amtr-Chr2:81420488 Amtr05g03229 Amtr-Chr5:59734022 dispersed
Amtr Amtr-Chr2:81420488 Amtr11g03829 Amtr-Chr11:74749130 transposed