AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr02g04102 ATGGGTACTCGGAATTTGGAGAAATTGGCATCGATTGACGCTCAGTTGAGGCTTTTGGTTCCTGGAAAAGTGTCTGAGGATGATAAGCTTATTGAGTATGATGCTTTGCTTTTGGATAAGTTTCTTGATATTCTTCAAGATTTACATGGGGACGATCTTAAGGAAGCGGTTCAAGAATGCTATGAGCTTTCTGCTGAATATGAAGGAAAGCGTGACCCGAAGAAGCTGGAGGAGCTTGGAAGTGTGTTGACAAGTTTGGATCCAGGGGACTCTATTGTCATTGCAAAAGCTTTTGCTCACATGCTTAACTTAGCCAATCTGGCGGAAGAAGTTCAGATTGCTTACCGTCGAAGAATCAAACTGAAGAAAGGTGATTTTGCTGATGAGGCTAATGCAACAACCGAATCAGACATTGAAGAAACTCTCAAGAAACTTGTGCATAAGCTTAACAAGACCCCTGAACAGGTTTTTGATGCACTCAAGAATCAAACAGTGGACTTGGTCTTGACTGCTCATCCAACTCAATCTATCCGCCGATCTTTGCTCCAAAAGCATGGAAGGATTCGCGACTGTCTGGCCCAGTTATATGCCAAAGACATCACTCCTGATGATAAGCAAGAACTAGATGAGGCTTTGCATAGAGAAATTCAAGCTGCTTTCCGTACCGATGAAATCAGGAGGACCCCACCAACTCCACAAGATGAAATGAGAGCAGGAATGAGCTACTTCCATGAAACAATCTGGAAGGGTGTTCCTAAATTCTTACGCCGTGTTGACACTGCTCTAAAGAATATTGGGATTAATGAACGTGTTCCGTATAATGCCCCTCTTATTCAATTCTCTTCATGGATGGGTGGCGACCGTGATGGTAACCCGAGGGTCACTCCTGAGGTAACGAGGGATGTTTGTTTGCTAGCCAGAATGATGGCTGCAAATATGTACTTTTCTCAGTTAGAAGATCTAATGTTTGAGATGTCCATGTGGCGTTGTACTGATGAACTGCGTGTTCGAGCAGAAGAAATATATAGAACAGCAAGGAGCGATGTGAAGCACTACATAGAGTTCTGGAAACGGGTTCCTCCCACTGAGCCTTATCGTGTGATTCTCAGTGATGTAAGGGACAGATTATATAATACACGTGAACGGGCTCGCCATTTACTAGCCCATGGGATATCTGACATCCCAGATGAAGCTGTTTATACCAATGTCGAACAGTTTTTGGAACCACTGGAGCTATGCTACAGATCACTATGTGCATGTGGCGACCGTGTGATTGCTGATGGAAGCCTTCTTGATTTTCTAAGACAAGTGTCCACATTTGGACTATCACTTGTAAAACTTGATATAAGACAAGAGTCTGAGCGCCACACGGATGTCCTTGATGCAATCACTCAACATTTAGAAATTGGGTCCTACCGTGAGTGGTCTGAAGAAAAACGCCAAGAATGGCTTCTATCTGAACTAAGTGGAAAGCGTCCTCTTTTCGGGACAGACCTCCCCAAAACTGAGGAAGTTAAGGATGTTTTAGACACATTTAATGTTTTAGCAGAACTCCCATCTGACTGTTTCGGTGCTTACATCATCTCAATGGCCACATCACCTTCTGATGTCCTTGCTGTCGAGCTTCTTCAACGCGAATGCCATGTGAAACAACCATTACGTGTTGTCCCTCTTTTTGAAAAGCTTGCTGACCTGGAGGCAGCCCCTGCAGCCATGGCCCGCCTTTTCTCAATCGAGTGGTACAAGAACCGGATCAACGGTAAACAAGAAGTCATGATTGGGTACTCTGATTCAGGAAAAGATGCGGGCCGGTTTTCTGCAGCGTGGCAGCTTTACAAAGCTCAAGAAGATATTATTAAAGTTGCAAAAGAGTTTGGAGTGAAACTTGTTATGTTTCACGGGCGTGGGGGGACCGTTGGTAGAGGTGGTGGGCCCACCCATCTGGCTATCCTGTCTCAACCACCAGACACCATTCACGGGTCGTTAAGAGTCACGGTTCAGGGTGAGGTCATAGAGCAATCTTTTGGTGAGGAACATTTGTGTTTTAGAACACTTCAGAGGTTTTGTGCAGCTACACTTGAGCATGGGATGAACCCACCAATCTCACCAAGGCCCGAGTGGCGTGCGCTTATGGACGAGATGGCCGTTGTTGCAACTGAGCAGTATCGTTCTATTGTTTTCAAGGAGCCACGTTTTGTCGAGTATTTCCGCCTTGCAACACCTGAACTGGAGTATGGGCGTATGAACATCGGAAGTCGCCCATCAAAAAGAAAACCAAGTGGTGGCATTGAATCACTAAGAGCCATTCCATGGATCTTTGCATGGACTCAAACGCGGTTCCATCTCCCAGTCTGGCTCGGGTTTGGGGCAGCATTCAAACATGCCATTCAAAAAGACAGCAAGAACCTTCAAATGCTCCATGAAATGTACAAAACATGGCCTTTCTTTCGGGTCACCATCGATTTAGTTGAAATGGTGTTCGCTAAAGGAGACCCGGGCATTGCTGCCCTGAATGACAAGCTCCTTGTTTCCGAAGATCTGTGGTCGTTTGGAGAATCTTTGAGAGGAAACTATGAAGAAACCAAAGATTATCTTCTCAAGATAGCTGGACACAAGGACCTTCTTGAGGGTGATCCCTACTTAAAACAAAGAATCAGGCTGCGCGATTCGTACATCACAACCTTAAATGTGTGTCAAGCGTATACACTAAAACGGATCCGTGACCCAAACTATCATGTGACATTAAGGCCTCATATTTCCAAAGAATATGCGGAGGAGTCAAGCAAATCAGTAGATGAGCTTATCCACCTGAACCCGACCAGTGAGTACGCGCCCGGTTTGGAGGACACACTCATCTTGACCATGAAAGGGATTGCTGCTGGAATGCAGAACACTGGTTAG 2901 45.36 MGTRNLEKLASIDAQLRLLVPGKVSEDDKLIEYDALLLDKFLDILQDLHGDDLKEAVQECYELSAEYEGKRDPKKLEELGSVLTSLDPGDSIVIAKAFAHMLNLANLAEEVQIAYRRRIKLKKGDFADEANATTESDIEETLKKLVHKLNKTPEQVFDALKNQTVDLVLTAHPTQSIRRSLLQKHGRIRDCLAQLYAKDITPDDKQELDEALHREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANMYFSQLEDLMFEMSMWRCTDELRVRAEEIYRTARSDVKHYIEFWKRVPPTEPYRVILSDVRDRLYNTRERARHLLAHGISDIPDEAVYTNVEQFLEPLELCYRSLCACGDRVIADGSLLDFLRQVSTFGLSLVKLDIRQESERHTDVLDAITQHLEIGSYREWSEEKRQEWLLSELSGKRPLFGTDLPKTEEVKDVLDTFNVLAELPSDCFGAYIISMATSPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAAMARLFSIEWYKNRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEDIIKVAKEFGVKLVMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFCAATLEHGMNPPISPRPEWRALMDEMAVVATEQYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHAIQKDSKNLQMLHEMYKTWPFFRVTIDLVEMVFAKGDPGIAALNDKLLVSEDLWSFGESLRGNYEETKDYLLKIAGHKDLLEGDPYLKQRIRLRDSYITTLNVCQAYTLKRIRDPNYHVTLRPHISKEYAEESSKSVDELIHLNPTSEYAPGLEDTLILTMKGIAAGMQNTG 966
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr02g04102 966 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 168 179 IPR018129 -
Amtr02g04102 966 SUPERFAMILY Phosphoenolpyruvate-pyruvate domain 33 966 IPR015813 GO:0003824(InterPro)
Amtr02g04102 966 PRINTS Phosphoenolpyruvate carboxylase signature 589 609 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Amtr02g04102 966 PRINTS Phosphoenolpyruvate carboxylase signature 280 295 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Amtr02g04102 966 PRINTS Phosphoenolpyruvate carboxylase signature 440 460 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Amtr02g04102 966 PRINTS Phosphoenolpyruvate carboxylase signature 631 660 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Amtr02g04102 966 PRINTS Phosphoenolpyruvate carboxylase signature 167 180 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Amtr02g04102 966 PRINTS Phosphoenolpyruvate carboxylase signature 220 236 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Amtr02g04102 966 PRINTS Phosphoenolpyruvate carboxylase signature 763 789 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Amtr02g04102 966 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 27 966 IPR021135 GO:0005829(PANTHER)|GO:0006099(InterPro)|GO:0008964(PANTHER)|GO:0008964(InterPro)|GO:0009507(PANTHER)|GO:0015977(InterPro)|GO:0048046(PANTHER)|GO:0048366(PANTHER)
Amtr02g04102 966 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 591 603 IPR033129 -
Amtr02g04102 966 Hamap Phosphoenolpyruvate carboxylase [ppc]. 23 966 IPR022805 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Amtr02g04102 966 Gene3D Phosphoenolpyruvate-pyruvate domain 308 443 - -
Amtr02g04102 966 FunFam Phosphoenolpyruvate carboxylase 1 308 443 - -
Amtr02g04102 966 Pfam Phosphoenolpyruvate carboxylase 34 966 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr02g04102 K01595 phosphoenolpyruvate carboxylase [EC:4.1.1.31]
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
11066 Amtr02g02570 Amtr02g04102
11277 Amtr02g04102 Amtr02g07918
11278 Amtr02g04102 Amtr07g01267
359026 Amtr02g04102 Amtr02g06920
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Amtr Amtr-Chr2:81656428 Amtr10g04497 Amtr-Chr10:104485217 dispersed
Amtr Amtr-Chr2:58444117 Amtr02g04102 Amtr-Chr2:81656428 wgd
Amtr Amtr-Chr2:81656428 Amtr02g06920 Amtr-Chr2:126038328 wgd
Amtr Amtr-Chr2:81656428 Amtr02g07918 Amtr-Chr2:147185257 wgd
Amtr Amtr-Chr2:81656428 Amtr07g01267 Amtr-Chr7:17637522 wgd