AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amtr02g04115 | ATGGCTTCAGGGTTATTATTAGATGCTGATAGGATTAATAAAGGGAATAGTAAGTGGGTAGAAGGTAATAAGGTTTACACAAGAAGGTTTAAGAAAACCACCAGTAACGCCGCCACCGGAGCCGCCTCCCCAACCCCTACCGCTACGGTTACTGTTGCAACCGAGCATGCGAATCCGGGATTCAATGATGGTTCGGTTGAAAATCGGGAGCCTGTTGGAAACGGGGTGGTGAAACCGGTTGTTGTTGTGGTGGATGGGCGGGTGAAGATTAATATAAAAGCTGCGAAAAAGGATGAAGTTATTGGGCTTATGGAGACGATGAAAGGGGAGCTTGAACAAGTGCGGCGTGTAGCTCAAAAGCTTGAAGATAAAGAGGCTGAGGTAACGGCGGTTTCAACTGCTGTTGGTGTTGCAGGCGATGGTGAGGGTTATAATCGTTTACAGTATTCGGGTAATGAGATAGGCGATAGGAGAGCTTTGTTAAGGGTTAATTCGGAAGTGGGTTCGGTTTCGAATGGTGTTGTAAGGCCTTTCGGGCAGTTAAGTGTGTCTGTTGGGAATATGAATAATGGAGTTGGTGAGTTTGTGGAGAAAGAGAAGCGAACACCGAAGGCTAACCCGTATTATCAAAGTTCGGAGTTTCTTCTTGGGAAAGACAGATTGCCAGCCGAAAGCAATAAGAGGCAGAAATCCAACAGTGGAAGAAAGCAAGGAAAGGAGTCGGATCGTATTTGGAAACGAGCGTTCAAGAGTTGCAACCATTTATTGCAGAGGTTAATGAAGCACAAATATGGTTGGGTGTTTAACGAACCGGTTAACGTGAAAATGTTAGGACTTCATGATTACCATGACATCATCCAACGCCCAATGGATTTGGGAACGGTTAAGAGTCGTCTTGCACAGAACTTCTACAAGTCACCAATGGAGTTTGCAGATGACGTGAGGCTCACGTTTCATAACGCGATGACGTATAACCCTAAAGGACAAGATGTGCATGTTATGGCAGAGGAGTTATTGATTCTTTTTGAAGAAAGATGGGCTGTGATTGAATCTGAATTTAATCAAAATTCGAGATACGGAATGATCTATGATCCAAGAACGCCTACTCCCACTTCAAGAAAGGCTCCTCATTTTGCACACCCTCCGTCAAGAATGCTGTACAGGTCAGAATCGATGAGCGTGCCTGTGATGACTAGGCAAAAGCCGTCTATATCTGCGCCAACAACTCGGACACCTGTACCGAAGAAACCTAAAGCCAGGGATCCAAATAAGAGGGACATGACTTATGAAGAGAAGCAAAAACTTAGTACAAATCTTCAGAGTTTACCTTCTGAAAAGCTTGACAATATCATCCAGATTATTAAAAAGAACTCATCGGTTTCACAACATGATGATGAGATTGAAGTTGATATCGACAGCGTTGATATAGAAACTCTTTGGGAACTCGATCGGTTTGTCACCAATTATAGAAAGAATTTGAGCAAGCAGAAAAGGAAAGCTGAACTTGCTCAAAAAGCAAGGGCAGAGGCCGGTGATGTTAATCAGATCATGAATCAAGAAAAAACAAATCCAGAGGTTCCAAAAAAAGATAAATTGACCGAGGAGAAGACTCTTGCTAGCAGACCTGTTGATCAAGGTGAGAGAGGAGGAGATAATGCTAGTAGTTCAAGCAGCTCTAGCAGTGATTCCGGGTCCTCTTCAAGTGATTCAGATAGTGACAGTTCATCTGAAGATGGATCAGATGCAGGTCGTTCTCCTCGAAATTGA | 1767 | 43.69 | MASGLLLDADRINKGNSKWVEGNKVYTRRFKKTTSNAATGAASPTPTATVTVATEHANPGFNDGSVENREPVGNGVVKPVVVVVDGRVKINIKAAKKDEVIGLMETMKGELEQVRRVAQKLEDKEAEVTAVSTAVGVAGDGEGYNRLQYSGNEIGDRRALLRVNSEVGSVSNGVVRPFGQLSVSVGNMNNGVGEFVEKEKRTPKANPYYQSSEFLLGKDRLPAESNKRQKSNSGRKQGKESDRIWKRAFKSCNHLLQRLMKHKYGWVFNEPVNVKMLGLHDYHDIIQRPMDLGTVKSRLAQNFYKSPMEFADDVRLTFHNAMTYNPKGQDVHVMAEELLILFEERWAVIESEFNQNSRYGMIYDPRTPTPTSRKAPHFAHPPSRMLYRSESMSVPVMTRQKPSISAPTTRTPVPKKPKARDPNKRDMTYEEKQKLSTNLQSLPSEKLDNIIQIIKKNSSVSQHDDEIEVDIDSVDIETLWELDRFVTNYRKNLSKQKRKAELAQKARAEAGDVNQIMNQEKTNPEVPKKDKLTEEKTLASRPVDQGERGGDNASSSSSSSSDSGSSSSDSDSDSSSEDGSDAGRSPRN | 588 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amtr02g04115 | 588 | Gene3D | - | 420 | 500 | IPR038336 | - | |
| Amtr02g04115 | 588 | MobiDBLite | consensus disorder prediction | 504 | 588 | - | - | |
| Amtr02g04115 | 588 | MobiDBLite | consensus disorder prediction | 523 | 542 | - | - | |
| Amtr02g04115 | 588 | PRINTS | Bromodomain signature | 295 | 313 | IPR001487 | GO:0005515(InterPro) | |
| Amtr02g04115 | 588 | PRINTS | Bromodomain signature | 279 | 295 | IPR001487 | GO:0005515(InterPro) | |
| Amtr02g04115 | 588 | PRINTS | Bromodomain signature | 313 | 332 | IPR001487 | GO:0005515(InterPro) | |
| Amtr02g04115 | 588 | PRINTS | Bromodomain signature | 263 | 276 | IPR001487 | GO:0005515(InterPro) | |
| Amtr02g04115 | 588 | Gene3D | - | 214 | 360 | IPR036427 | GO:0005515(InterPro) | |
| Amtr02g04115 | 588 | Pfam | Bromodomain | 252 | 336 | IPR001487 | GO:0005515(InterPro) | |
| Amtr02g04115 | 588 | CDD | Bromo-plant1 | 248 | 346 | IPR037377 | - | |
| Amtr02g04115 | 588 | MobiDBLite | consensus disorder prediction | 398 | 428 | - | - | |
| Amtr02g04115 | 588 | ProSiteProfiles | Bromodomain profile. | 260 | 332 | IPR001487 | GO:0005515(InterPro) | |
| Amtr02g04115 | 588 | SUPERFAMILY | Bromodomain | 233 | 353 | IPR036427 | GO:0005515(InterPro) | |
| Amtr02g04115 | 588 | Pfam | Bromodomain extra-terminal - transcription regulation | 427 | 487 | IPR027353 | - | |
| Amtr02g04115 | 588 | MobiDBLite | consensus disorder prediction | 549 | 573 | - | - | |
| Amtr02g04115 | 588 | ProSiteProfiles | NET domain profile. | 417 | 497 | IPR027353 | - | |
| Amtr02g04115 | 588 | SMART | bromo-6 | 242 | 351 | IPR001487 | GO:0005515(InterPro) | |
| Amtr02g04115 | 588 | PANTHER | OSJNBA0053K19.4 PROTEIN | 22 | 580 | - | - | |
| Amtr02g04115 | 588 | Coils | Coil | 104 | 131 | - | - | |
| Amtr02g04115 | 588 | MobiDBLite | consensus disorder prediction | 414 | 428 | - | - | |
| Amtr02g04115 | 588 | MobiDBLite | consensus disorder prediction | 220 | 242 | - | - | |
| Amtr02g04115 | 588 | Coils | Coil | 486 | 506 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amtr02g04115 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 11284 | Amtr02g04115 | Amtr07g01279 | |
| 359030 | Amtr02g04115 | Amtr02g06904 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Amtr | Amtr-Chr2:30438560 | Amtr02g04115 | Amtr-Chr2:81788430 | dispersed | |
| Amtr | Amtr-Chr2:81788430 | Amtr02g08217 | Amtr-Chr2:155611596 | dispersed | |
| Amtr | Amtr-Chr3:136866574 | Amtr02g04115 | Amtr-Chr2:81788430 | transposed | |
| Amtr | Amtr-Chr9:24543011 | Amtr02g04115 | Amtr-Chr2:81788430 | transposed | |
| Amtr | Amtr-Chr10:109507795 | Amtr02g04115 | Amtr-Chr2:81788430 | transposed | |
| Amtr | Amtr-Chr2:81788430 | Amtr02g06904 | Amtr-Chr2:125739645 | wgd | |
| Amtr | Amtr-Chr2:81788430 | Amtr07g01279 | Amtr-Chr7:17762389 | wgd |