AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr02g04118 ATGCACTGTCTACCTATACAATCCCTCACCCCTCACCCCAAAACCCACTTAAAATCCCAAACCCATGTCCTCAAATTCTTACCAACACCTCAATCCATTCACCTTAATAATAATAATAATAATAAACACTGCAAAAATATTATTAATAGGAGTAATGGCTACAGTTATACTTGTTGTTTGAAGGCTGATGTGGGTTTAAGTTGTAATGAGGAGGAGTTTGATATGGAATTGGGGCGTATGTTGAGGCTGTTGCCTGAGGAGATGAGGAGGAGGGTTAATGAGCATGAGGAATTGCATCAGTTGATTGAGGTTGTTATGGATTTGGGCCGGAAGCCGCTCGCGCGGTTTCCGTCTGGGGATTTTGTGTTGTCTGATGATTTGATCACTGTTGATGATCTTGAACATGCTACTTCTTTGGTAGGTGATTTCGCTATTGATAATCGAGCTGGCATCAGCAGAACCTTACATCGAATAAGTGCCATCAGAAACAGGAAAGGCACAATAATTGGGCTAACATGTCGTGTTGGCCGAGCTGTATCAGGAAGTGCCAAGTTATTGCAAGATTTGGTTAAAGATGGATCTTCTTTGTTGCTTATTGGACCACCAGGAGTAGGAAAAACTACAATTATCAGGGATGTAGCTCGAATGCTTGCAAATGATTATAATAAACGTGTAATGATTGTTGATACTTCAAATGAAATTGGTGGAGACGGTGATATACCACATTCGGGTATAGGCAATGCTCGACGGATGCAAGTTCCTGATGCCGACATGCAACATAAGGTATTAATAGAAGCAGTTGAAAATCATATGCCCCAAGTGATTGTAATTGATGAAATTGGTACAAAGCTTGAGGCAGCAGCTGCTAGCACCATAGCACAACGTGGAATTCAGTTAGTTGCAACTGCTCATGGTATCACAATTGAGAATTTAGTACAGAATCCTTCATTGGATATGCTTGTTGGAGGAATACAGAGTGTGACACTAGGAGATGAAGAGGCAAACCGAAGGGGTGTACAGAAATCAGTATTGGAGAGAAAAGGTCCTTCCACTTTTGATTGTGCCGTTGAGATTATTTCTAGGCTCGAGTTGAGAGTTCACAGCAGTCTGGAAGCAACCGTTGATGCAATTCTTTCTGGCCGTTCTCCGAACTATCAAGTTTGCAAGTTAAATCAGGGAGAGATAGATCTTGCATTACAAAGTGATCCAATTACATACGAATCATTTGTCAAGAAGAGTGTCTCTACAGTTGAAGGCATTCCACAGTGGACCAACGAAAAGCTTACACCTGACAAACAAATTTCTAAAGAGTCTCAAATTGATACAGATAATTCTTATGATAAGCCGTCCTTGTGTTTATTTCTCTATGGCGTCTCGGAGACAAGTACAAGACAAGTATTCAAACACTTAAAGATGGAATCCGCTGTTGAGTTTAGTGAGAATATTAGTGAAGCAGATGCAATACTTGCATTATTGTCTAAAATCAAGAAAAATTCTCGGATTCAGGCCGCTGCCCACTCTAACGACATACCAATTTATGTCACGAAGACAAGCTCATTGACACAGTTAACAAAGGCCATAGAGGCATTAGTGACTGATTATGATAATGGTTTTGAAGATATTGAAGATGAATATTCCCAGATAAATGAATCAGAGAAGACTGATGCTTTGGAGGAAGTGAGGATTGCAATTGAACAGGTTGTAATCCCAAAAGGTGAACCTGTAGAATTACTTCCAAGGCAACCAAACATTATGTTGCTTCAAAAGGATCTAATTCGTAAATATAAGCTGCAAGCACAGCGTGTCGGTTCAGAGGTGGATGGAAGGCTTCGTATTCTACCATTTCAAGCTGAAAAACAAGATAAAAATGATGTCGAAGATGATGACCATGATGATGATGAAGACAATGATGGTGATGATACTGAACTTAATGAGCTGTCTAACGTGAATGGCTCGCCCTATGCGGTGAACAGATTGCCTTTTCTGCCTGACTAG 1995 40.45 MHCLPIQSLTPHPKTHLKSQTHVLKFLPTPQSIHLNNNNNNKHCKNIINRSNGYSYTCCLKADVGLSCNEEEFDMELGRMLRLLPEEMRRRVNEHEELHQLIEVVMDLGRKPLARFPSGDFVLSDDLITVDDLEHATSLVGDFAIDNRAGISRTLHRISAIRNRKGTIIGLTCRVGRAVSGSAKLLQDLVKDGSSLLLIGPPGVGKTTIIRDVARMLANDYNKRVMIVDTSNEIGGDGDIPHSGIGNARRMQVPDADMQHKVLIEAVENHMPQVIVIDEIGTKLEAAAASTIAQRGIQLVATAHGITIENLVQNPSLDMLVGGIQSVTLGDEEANRRGVQKSVLERKGPSTFDCAVEIISRLELRVHSSLEATVDAILSGRSPNYQVCKLNQGEIDLALQSDPITYESFVKKSVSTVEGIPQWTNEKLTPDKQISKESQIDTDNSYDKPSLCLFLYGVSETSTRQVFKHLKMESAVEFSENISEADAILALLSKIKKNSRIQAAAHSNDIPIYVTKTSSLTQLTKAIEALVTDYDNGFEDIEDEYSQINESEKTDALEEVRIAIEQVVIPKGEPVELLPRQPNIMLLQKDLIRKYKLQAQRVGSEVDGRLRILPFQAEKQDKNDVEDDDHDDDEDNDGDDTELNELSNVNGSPYAVNRLPFLPD 664
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr02g04118 664 CDD AAA 193 282 - -
Amtr02g04118 664 Gene3D - 169 375 IPR027417 -
Amtr02g04118 664 FunFam uncharacterized protein ycf45 isoform X2 157 374 - -
Amtr02g04118 664 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 77 336 IPR027417 -
Amtr02g04118 664 PANTHER KINASE-RELATED 38 577 - GO:0009507(PANTHER)
Amtr02g04118 664 MobiDBLite consensus disorder prediction 625 642 - -
Amtr02g04118 664 CDD R3H-AAA 555 614 IPR034081 -
Amtr02g04118 664 SMART AAA-5 192 323 IPR003593 GO:0016887(InterPro)
Amtr02g04118 664 MobiDBLite consensus disorder prediction 617 664 - -
Amtr02g04118 664 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 200 219 - -
Amtr02g04118 664 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 559 577 - -
Amtr02g04118 664 Pfam Sporulation stage III, protein AA 168 322 IPR045735 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr02g04118 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Amtr Amtr-Chr2:81852408 Amtr03g06699 Amtr-Chr3:143419920 dispersed