AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr02g04124 ATGGAAGAAGAATACTCTCTCGTTGATACTTCAAACCTCTTACAAGCAGCTTCTGATTTCTCCTTTAATCCTGGTTCTCGATCAGAAGCTGCTGTGAAGGAGTTTCTTGATTCCTTTCCTCTTCCTGTCATTATCAGTGCTTTGCAAACCAAAGGAGATGTGCCTGGTTTGGAGGATGCACTGGTTGATTGTTTAGAGAAGATATTTAGAACAAAATACGGGGCCTCTCTCATTCCACATTTCATGCCTTTCATTGTGGTCGGACTTCAAGCATATTCTCAGAGAGTCAGAGCTTTGGCATGTACAACGATCTCTAGCCTTTTGGAGAATCTTGAAGATAATACTGGTTTAGCTACCTCGTTGATCAAAGAGAATGACGTGTATCCGCTTTTGCTTAATTGTCTTGTCGATGGTGATGAACAGGTGGCTGTTGCTGCAACAGATGCAATCAAGAATTTAGCAGGATCCCAACAGGGGATAGAAATCATATTCCCATCTACTCCTAATGATACTACAGATATCGCAAAGTTAGCAGCAAAATGGTCATCACTGGGACGAGTTCGAGTATTGGCATTAATAGTGAAGCTATTCTCTACTTCAAGTGCAGTAGCAACGTTAATTTACAACTCAAATCTTTTAGGTCTTTTGGAGGCAGAGATTCACAATGTTAAGGATACACTTATGACTTTAAGTGTTTTGGAGCTCCTTTATGAGTTGGCTGAGGCTCCTCATGGAATGGAATATGTTCTTAAGACCAATATTTTGCAGTTACTTGTTTCAATAATCAGGGATTCTAATGCTGAATCGATGTTGCGATCAAGGGCTATGATGATAAGCGGGCGGCTTTTATCTAAGGAGAACATTCTCAAGTTTATAGACGAATCTGGTATAAAAGCTGTGATCTCAGCCATTGACGAAAGGATTTCATTGCTGGAAAGTCAAGATGCAGATGAATATGAATGTGCTATTGAAGCATTGGGTCAAATAGGGTCATCATCCCAAGGAGCTGTATTGCTGCTGTCTAACACATCTGCCGCTAAACATGTTGTCAATGCTGCATTTGACCTGCATGGTCGTGGCAGACAACTAGCTGCATTGCATTCTCTTGGAAATATTGTTGGAGAAACGCGGGCTGAAAACAACAAATTGTTGAAGTCTGATGCTGAAGAAACCCTGCGTAGATTAATTTATGAAACGGCATCCAACTCTCCAAAGCTTATACCATCGGGTCTCATTCTTTCAATTCTGAAACTCGAATCTGAATTTCGTATTGCGGGTTACCGGTTGATAACAGGACTGTCTGCTAGACCATGGTTTCTTGTGGAGATCTGCTCAAGACAAGAGATAATAAATATAATCACAGATTCATATACAGAAACAACAAAAATAGGTATGGAGGCGCGATACAACTGCTGTGAAGCAACCTATAAGGCTCTTGCATCATCGTCTAAATTTCTGAGCGATCCTTCACTTTCCGGGACTGCAGAAAAGCTGTTGGAATCCATTAAACAAGGTCCTTATCTTGCGAAAGGACGAAAACAAGAAGCGCGACCTGAAGTCGCAACTGCGGACAGATTTTAG 1581 41.24 MEEEYSLVDTSNLLQAASDFSFNPGSRSEAAVKEFLDSFPLPVIISALQTKGDVPGLEDALVDCLEKIFRTKYGASLIPHFMPFIVVGLQAYSQRVRALACTTISSLLENLEDNTGLATSLIKENDVYPLLLNCLVDGDEQVAVAATDAIKNLAGSQQGIEIIFPSTPNDTTDIAKLAAKWSSLGRVRVLALIVKLFSTSSAVATLIYNSNLLGLLEAEIHNVKDTLMTLSVLELLYELAEAPHGMEYVLKTNILQLLVSIIRDSNAESMLRSRAMMISGRLLSKENILKFIDESGIKAVISAIDERISLLESQDADEYECAIEALGQIGSSSQGAVLLLSNTSAAKHVVNAAFDLHGRGRQLAALHSLGNIVGETRAENNKLLKSDAEETLRRLIYETASNSPKLIPSGLILSILKLESEFRIAGYRLITGLSARPWFLVEICSRQEIINIITDSYTETTKIGMEARYNCCEATYKALASSSKFLSDPSLSGTAEKLLESIKQGPYLAKGRKQEARPEVATADRF 526
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr02g04124 526 SUPERFAMILY ARM repeat 80 410 IPR016024 -
Amtr02g04124 526 Pfam Proteasome non-ATPase 26S subunit 79 513 IPR019538 GO:0043248(InterPro)
Amtr02g04124 526 Gene3D - 9 404 IPR011989 -
Amtr02g04124 526 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 5-RELATED 1 526 IPR019538 GO:0005829(PANTHER)|GO:0043248(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr02g04124 K06692 26S proteasome non-ATPase regulatory subunit 5