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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr02g04125 ATGGGTCGGGTTTTTTTGGTGGAGCTAGAAGGACGGACTTACAAATGCAAGTTCTGCAAAACCAACTTAGCTCTTGCCGAGAATGTTGTCTCTCGGGGTTTTCATTGCCGCAGAGGAAAAGCTTACCTTTTTAGCAACGTGGTGAATGTGACAGCTGGACCTATTGAGGAAAGGATGATGCTATCAGGATTGCATACCGTTACAGATGTATACTGCGTATGCTGTGGACAAATTGTTGGCTGGAAATATGAGACTGCGCATGAACAATCACAGAAGTATAAAGAAGGCAAATTTGTTCTTGAAAGAGGAAGGATCATCGACGGGATTGATTCAGAATTTTACATCGATACACGCCCGAGTTCAAGTGATGCTGAGGAAGCCTAA 384 43.75 MGRVFLVELEGRTYKCKFCKTNLALAENVVSRGFHCRRGKAYLFSNVVNVTAGPIEERMMLSGLHTVTDVYCVCCGQIVGWKYETAHEQSQKYKEGKFVLERGRIIDGIDSEFYIDTRPSSSDAEEA 127
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr02g04125 127 PANTHER PROTEIN YIPPEE-LIKE CG15309-RELATED 1 106 IPR039058 -
Amtr02g04125 127 ProSiteProfiles Yippee domain profile. 12 109 IPR034751 -
Amtr02g04125 127 Pfam Yippee zinc-binding-DNA-binding -Mis18, centromere assembly 14 105 IPR004910 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr02g04125 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Amtr Amtr-Chr2:81990094 Amtr06g01941 Amtr-Chr6:37578223 dispersed
Amtr Amtr-Chr2:81990094 Amtr02g00262 Amtr-Chr2:6270247 transposed