AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr02g04176 ATGGCAATGAATCCATTTGGTTACCAACAACAACCAGTCGTCGGATCGTTAACTCCGTCGAAGAAGAGCAACTACAAAGTCACCAACAGGCTACCTGAAGGCACTCATCCCATATACGCCGTCGTTTTCAACTTCATCGACTCTCGTTATTACGACTTCTTCGCCACTGTTGGTGCTAATTGCGTTACTGTATACAAATGCCTTGAAGGTGGCATTATTGATGTACTTCAGTCCTACATTGACGAAGATATAGACGAATCATTCTACACTGTCAGTTGGGCTTGTGATGCCGATGGAACACCGTTGCTAGTAGCGGGAGGTATCAATGGTATAATCCGGGTCATTGATGCTCGCAATGAGAAGATACACAAGAGTTTGGTTGGACATGGCAACTCAGTAAACGAAATTAGAACACAAACATTGAAACCTTCTTTAGTACTTTCTGCAAGTAAAGACGAATCTGTTCGCTTGTGGAATGTTCAAACTGGAATATGCATTTTGATATTTGCTGGTGCAGGTGGTCATTACAATGAAGTGTTAAGTGTGGATTTCCATCCTTCGGATATATATCGTATTGCCAGTTGTGGTATGGATGGCACTGTAAAGATCTGGTCTATGAAAGAGTTTTGGACATCCATTGAGAGGTCTTTTACGTGGGATGGACTTCCTTCAGAGTTTCCTACAAAACGTGTGCAGTTCCCGGTATTTATTGCTTCAATCCATACAAATTATGTTGACTGCATTAGGTGGCTTGGTGATTTCATACTGTCTAAGAGTGTTGATAACGAGATCATATTGTGGGAGCCAAAGATGAAAGAACAGTCTCTAGGAGAGGGCACGGTGGATATCCTTCAGAAATATCCGGTCCCTGATTGTGACATTTGGTTTATGAAGCTTTCCTGTGATTTCCATTACAATGCAGCAGCTATAGGGAACAGGGAAGGGAAAATCTATGTATGGGATTTGCAGACAAGCCCGCCTGCTCTAATTGCAAGGTTATCTCATGCTCAATCCAAGTCTGCCATCAAGCAAACTGCCATGTCGTTTGATGGAAGCACATTACTTGGCTGTTGTGAAGACGGCACCATCTGGCGTTGGGATGCCGTGTAG 1110 43.24 MAMNPFGYQQQPVVGSLTPSKKSNYKVTNRLPEGTHPIYAVVFNFIDSRYYDFFATVGANCVTVYKCLEGGIIDVLQSYIDEDIDESFYTVSWACDADGTPLLVAGGINGIIRVIDARNEKIHKSLVGHGNSVNEIRTQTLKPSLVLSASKDESVRLWNVQTGICILIFAGAGGHYNEVLSVDFHPSDIYRIASCGMDGTVKIWSMKEFWTSIERSFTWDGLPSEFPTKRVQFPVFIASIHTNYVDCIRWLGDFILSKSVDNEIILWEPKMKEQSLGEGTVDILQKYPVPDCDIWFMKLSCDFHYNAAAIGNREGKIYVWDLQTSPPALIARLSHAQSKSAIKQTAMSFDGSTLLGCCEDGTIWRWDAV 369
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr02g04176 369 PRINTS G protein beta WD-40 repeat signature 146 160 IPR020472 -
Amtr02g04176 369 PRINTS G protein beta WD-40 repeat signature 192 206 IPR020472 -
Amtr02g04176 369 PRINTS G protein beta WD-40 repeat signature 255 269 IPR020472 -
Amtr02g04176 369 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 172 207 - -
Amtr02g04176 369 ProSitePatterns Trp-Asp (WD) repeats signature. 146 160 IPR019775 -
Amtr02g04176 369 Gene3D - 20 369 IPR015943 GO:0005515(InterPro)
Amtr02g04176 369 FunFam polycomb group protein FIE1 21 369 - -
Amtr02g04176 369 SMART WD40-4 231 268 IPR001680 GO:0005515(InterPro)
Amtr02g04176 369 SMART WD40-4 74 116 IPR001680 GO:0005515(InterPro)
Amtr02g04176 369 SMART WD40-4 326 367 IPR001680 GO:0005515(InterPro)
Amtr02g04176 369 SMART WD40-4 162 205 IPR001680 GO:0005515(InterPro)
Amtr02g04176 369 SMART WD40-4 119 159 IPR001680 GO:0005515(InterPro)
Amtr02g04176 369 SMART WD40-4 280 321 IPR001680 GO:0005515(InterPro)
Amtr02g04176 369 SMART WD40-4 24 66 IPR001680 GO:0005515(InterPro)
Amtr02g04176 369 ProSiteProfiles Trp-Asp (WD) repeats profile. 126 168 IPR001680 GO:0005515(InterPro)
Amtr02g04176 369 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 126 163 - -
Amtr02g04176 369 PANTHER POLYCOMB PROTEIN 11 368 IPR051243 GO:0000122(PANTHER)|GO:0006342(PANTHER)|GO:0031491(PANTHER)|GO:0035098(PANTHER)
Amtr02g04176 369 SUPERFAMILY WD40 repeat-like 24 367 IPR036322 GO:0005515(InterPro)
Amtr02g04176 369 Pfam WD domain, G-beta repeat 339 367 IPR001680 GO:0005515(InterPro)
Amtr02g04176 369 Pfam WD domain, G-beta repeat 124 159 IPR001680 GO:0005515(InterPro)
Amtr02g04176 369 Pfam WD domain, G-beta repeat 174 205 IPR001680 GO:0005515(InterPro)
Amtr02g04176 369 ProSiteProfiles Trp-Asp (WD) repeats profile. 172 207 IPR001680 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr02g04176 K11462 polycomb protein EED
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Event-related genes

Select Gene_1 Gene_2 Event_name
359044 Amtr02g04176 Amtr02g06673
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
197500 Amtr Amtr02g04176 Amtr-Chr2:82736460 Amtr04g01359 Amtr-Chr4:21899275
298054 Amtr Amtr02g04176 Amtr-Chr2:82736460 Amtr02g06673 Amtr-Chr2:120450257