AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr02g06438 ATGGGGAAGAGAAAGGATCGTAGGCTTAATGCTAATCGAAGAGTCAAACTCGATCTTTTACCGGAACCCTCTGGAGATTTTGGTGATTCGTCCAACCAAGAAGAATTTGGAGTTGGCGGCAATGGAAAAAATCAAGCTGGGTCACCCAATTCACCATCTTCTTCAGATCAAAGGCCAGAAAATCCTCTGTTGTTGCTTGGACAGTATAGTGATGAAGAAATGGAGGAAGGATCGAGTCAAGAAATAAGCCATGAAGCGAGAGAAAAGTCTCCAGCTGTGCTGGATGAGCAGGTAAAGGCGCACGATCATGATAGTACAGGAGCAGATGTAGATGAAAGCCAATTTACAGAAAAAGTTGATCAAGAAAACAAGGAACCTTCTTCTTCAATGGATGTTCTGCCAATTGTGGATAAAGTTGGTGTCATAGAAGATGATAAGCCTGAACCTCTACATAGAGATACAGATACTGTGGATCGGGCCTCTGTTTCATTGACATCTGATATGCAGACAACAGGGGACGCGGGTTTGGGATGGAAAATGGTGTTGCATGAGGAAAGTAATTCATATTATTACTGGAACGTTGCGACTGGTGAAACTTCTTGGGATGTACCTGATGTTTTGGCCCAAGGAAATGAATTGGCATATGATCCTAAATCTGTACCAGAAAGGGAAGAAACGCATGCGACTTCTGTTGATACACAAGCTTATAATGAATCCACGAATGGGGTGGTTCTTGAGGCCAAAGATATTGTTAATCCTAGGATTGAATTGAATGTGCATAGTGAAAACTATACAAATATCATGGCAAATGATAAAGCTGAGGGCCTTGCTACACAATCTTGTGAAGCTTTGAGTAATGTGGAAGCCTACCATAATGATTCTATTATTCAAGATATGGGTGGCGAATCTTCTGATTCTTTTCGTCTTCTGCAACTTTGTGAGAATCTATCAGAAAGATTAAAACCTCTGGAAGAGTCTGAAGGGTTCAGTGACCGGATATCTAAGTTGATGTTTGAACTTGATATAAGGCTTGCAGACATTAAGTCACTAGTACCTTATGGGTCATCGTTGCTTCCTTTTTGGTTGCATTCAGAAAACCAGCTGAAAAATCTGGAATCTTCTATCAACAATGAACTTCTAAAGCATTCCCAATTCACAAATATTGGTGAAAATAATGAGCCAAAAACCAAATTTCAAGAAAATACCGGTGAGTCCCATGAAAATGCAATTCTAGCTGATATTGATCCGAATGTGGGCCACCACACGGTTGAAGATGAAGACATGGATGTGGAAATGGAAGTTGAAGATACTGCAATTCATTCTAAAGATGAAGCCGGCGGCCAGAACATCCCCCACCTGGATCAATCTATACCACCGATTCCGAATGAAAACCTTGATTCTCGTGGATTTGAACAAGATTCTGACGTTCCACTTCCTCCTAATGATGAATGGATTCCTCCTCCTCCACCGGATGAAGAACCATTTCCTCCACCACCACCAGATGAGCCACCCGAAGCCCCATTACCGCCACAACCATCAGATGTGCAGACAACACAACCTTACTCTTATGGAGAACAATATAGTTATACATACCCAGGCTCTGGTTTTGATTACTATGCTCAAACAAGCACTGAAATCCCGAGTAACGGCTATTATGTAGATGCCAATGGGTCTCATCTAGCTGCTCCCCTCCCAACCGTTTATTATGCACCAGTGGTGAACCCAGAGCCCGTGACATATTACACCGTACAAGATGGGGCCATACCACACGTACCAGGTATCAGTGGTGTAGAAACTTCTGGTTTACAGAATTCGGTTTATGAAAACATCATCTCTGATCCAACCAAATCGTCTACGGTGGTTCCTTCTAATCCGGCCCCTTCTCATGTATCAGAAAGTTCTAGCGTAACACATGATGTTTCCGTGTCAGCTTCTTCTGTTGCTCCATCAGAAACGGTTCCTAAGGTTCAACCTAAAGTTACACGTATCAAGAAAAGAACAGTTGCAACGGTTCCCACTCTAAGGGCCAACAAGAAAGTTTCTGGCTTGGTGGATAAGTGGAAGGCGGTTAAAGAGTCATTGCATGAAGACGAAGAAGACGAACCTGAGAATGCGTTAGAGGTTTTAGAGAAAAAACGACAACGAGAAATTGAGCAATGGCATGCCCAGCAGATTGCATCCGGAGAAGCCAAAGACAATGCCAACTTTCAGCCGCTTGGTGGTGATTGGCGGGAGAGGGTTAGGCGAAAGAGAGCTAAAAAAGCAGCACAAGCTGAAGAAAATCTAGAACCTGCCGTTGATGAAACAAAACAATCAACAAAACAACAGCCCGATCTTGCTGAACTTTCCAAACAACTCCCAACGGGATGGCAGGCATATTGGGACGAATCATCGAAGCAGGTTTATTATGGTAACTCCAAGACATCAGAGACAACATGGACTAAACCGACAAAGTGA 2457 43.02 MGKRKDRRLNANRRVKLDLLPEPSGDFGDSSNQEEFGVGGNGKNQAGSPNSPSSSDQRPENPLLLLGQYSDEEMEEGSSQEISHEAREKSPAVLDEQVKAHDHDSTGADVDESQFTEKVDQENKEPSSSMDVLPIVDKVGVIEDDKPEPLHRDTDTVDRASVSLTSDMQTTGDAGLGWKMVLHEESNSYYYWNVATGETSWDVPDVLAQGNELAYDPKSVPEREETHATSVDTQAYNESTNGVVLEAKDIVNPRIELNVHSENYTNIMANDKAEGLATQSCEALSNVEAYHNDSIIQDMGGESSDSFRLLQLCENLSERLKPLEESEGFSDRISKLMFELDIRLADIKSLVPYGSSLLPFWLHSENQLKNLESSINNELLKHSQFTNIGENNEPKTKFQENTGESHENAILADIDPNVGHHTVEDEDMDVEMEVEDTAIHSKDEAGGQNIPHLDQSIPPIPNENLDSRGFEQDSDVPLPPNDEWIPPPPPDEEPFPPPPPDEPPEAPLPPQPSDVQTTQPYSYGEQYSYTYPGSGFDYYAQTSTEIPSNGYYVDANGSHLAAPLPTVYYAPVVNPEPVTYYTVQDGAIPHVPGISGVETSGLQNSVYENIISDPTKSSTVVPSNPAPSHVSESSSVTHDVSVSASSVAPSETVPKVQPKVTRIKKRTVATVPTLRANKKVSGLVDKWKAVKESLHEDEEDEPENALEVLEKKRQREIEQWHAQQIASGEAKDNANFQPLGGDWRERVRRKRAKKAAQAEENLEPAVDETKQSTKQQPDLAELSKQLPTGWQAYWDESSKQVYYGNSKTSETTWTKPTK 818
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr02g06438 818 CDD WW 787 817 IPR001202 GO:0005515(InterPro)
Amtr02g06438 818 Gene3D - 173 217 - -
Amtr02g06438 818 ProSitePatterns WW-rsp5-WWP domain signature. 178 204 IPR001202 GO:0005515(InterPro)
Amtr02g06438 818 Pfam WW domain 786 816 IPR001202 GO:0005515(InterPro)
Amtr02g06438 818 Pfam WW domain 177 204 IPR001202 GO:0005515(InterPro)
Amtr02g06438 818 CDD WW 177 205 IPR001202 GO:0005515(InterPro)
Amtr02g06438 818 MobiDBLite consensus disorder prediction 443 520 - -
Amtr02g06438 818 SUPERFAMILY WW domain 785 817 IPR036020 GO:0005515(InterPro)
Amtr02g06438 818 SUPERFAMILY WW domain 166 205 IPR036020 GO:0005515(InterPro)
Amtr02g06438 818 MobiDBLite consensus disorder prediction 720 784 - -
Amtr02g06438 818 MobiDBLite consensus disorder prediction 480 514 - -
Amtr02g06438 818 ProSitePatterns WW-rsp5-WWP domain signature. 790 816 IPR001202 GO:0005515(InterPro)
Amtr02g06438 818 Gene3D - 779 818 - -
Amtr02g06438 818 PANTHER OS06G0298400 PROTEIN 400 818 - -
Amtr02g06438 818 MobiDBLite consensus disorder prediction 77 125 - -
Amtr02g06438 818 ProSiteProfiles WW-rsp5-WWP domain profile. 177 206 IPR001202 GO:0005515(InterPro)
Amtr02g06438 818 ProSiteProfiles WW-rsp5-WWP domain profile. 784 818 IPR001202 GO:0005515(InterPro)
Amtr02g06438 818 MobiDBLite consensus disorder prediction 1 128 - -
Amtr02g06438 818 MobiDBLite consensus disorder prediction 742 767 - -
Amtr02g06438 818 MobiDBLite consensus disorder prediction 768 782 - -
Amtr02g06438 818 MobiDBLite consensus disorder prediction 26 61 - -
Amtr02g06438 818 MobiDBLite consensus disorder prediction 615 635 - -
Amtr02g06438 818 SMART ww-5 173 206 IPR001202 GO:0005515(InterPro)
Amtr02g06438 818 SMART ww-5 785 818 IPR001202 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr02g06438 K24774 formin-binding protein 4
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Amtr Amtr-Chr10:62360829 Amtr02g06438 Amtr-Chr2:116213336 dispersed