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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr02g06572 ATGGTGGCGGTTAAGGGGTTAAGCACATCCAAGGTTAGGGTTTCAGGAGAACGCGAGACGCGGAAGACCGGTGGAGTTAGAAGTTTGAAGGTGTATGAAGAAGATGCCAAGGTTAAGATTACGCGACGGGATCATGGTGCCGCGGATACTAAAAGGAAAGCTGTTCCAGTAAAAGCTGAAATCAGTCGTATCAATGCCGATTGTCAAAAGGAGGCCCTCAACAAGTTGGACAAGATTAATGGGAAACTCATCAACTCTGCTCAAACGAAAGTAGGAAGAAAAGTATTGTCGGATATCAGCAATTCCCAGGGTATCTTTCAGAAGAAGACGGCTGCTGATGGCTCCAAACCAGGGAAAGGAAAAATGGAAAAGATGACGTATTCACAACGGGCCTCAATTTCATTAGGCAAGGATCTGAAGGTCTTCAATAGTAATCCAAAGACAAGGGGTCAGGACATTGGGAAAGGTAAAATGGAAAGGATGACACATTCACAACGGACCTCAATTTCATTAGGCAAGGATTTGAAGGTATTCAATGGAAATTCAAAGACAAGGACTCAAGATACTGTTGCTAATGTAACAAGGAAGTCTGCAATGACATATTGCCCACCACAAAGGAAATCTTTACCAGTCCTAAAGCATGTTGACAAGGAAGAGAAATCTGATATCAAGAAAGGAAATAAGGATACTAAATTGAAGAACAAGGACAAACATGGCTTTTTTGTTAAACCTAAAGTTGGCACAACAGTTGTACCACAAGTAAGCAAAACTCAGGACTACCGTTGGAAGAACAGAGCTAGTGATGGATATTTAAAAATGGCATCAGATGGTCAACCAACAGGGGACAAACAGAGGCTGTCTAGGATATCAATGAAGCCAACCGTGAAAACAACAGTTGGTATTCCCAAAGCTCAAAGGGTATCAAGACACAGTTCTGTTTTTACCAAATCAACATCCACAACTTCTGTTTTATCCAAGAAAAATGAAACGTCAAAGTCTGAATCTGTTTCCCGTAAGCAAATTGCACATGATGTCACATTAGATGCAAGTACATCAAAACTCACTGCCAAGGGGAAATCTGGTCGCCGAAAATCCTACACGTCTATGTTAATGGAAAGAACTAAGCTTCTAAAGGATCAGGTTAGTGTCACCAAGGAGGAGATCCTGCCCAACATTTATGATGACAGCAATCAACTTGAAGTTGCTGAATATGTTGATGAGATCTATCAGCATTATTGGGTCACAGAAGCAAATAATCAACCACTGAAAAACTATATGGAGAATCAAACAGATATCACTCCTCAAATGCGGGGCATACTGATCAATTGGCTAATAGAAGTACACATGAAATTTGATTTAATGCAAGAGACACTTTATCTGATGGTCACACTCTTGGACTTTTACTTGTCTGCTGTCACGATTAAAAGAAGTGAAATGCAATTAGTTGGTCTTACATCACTATTACTAGCATCAAAGTATGAGGACTTTTGGCATCCAAAGGTTATGGAATTAATTAGTATATCAGCAGAGACATACACAAGAGAGCAAATGCTTGAAATGGAGACGACTATTTTAAGGACACTACACTTCCGTCTTAATTTGCCTACACCTTATGTTTTCATGCTGAGATTTCTTAGAGCTGCACAGGGAGACAAAAAGTTTGAAAAGCTAGCATACTTCCTCATTGAGCTGTGCTTGGTGGAATATGATGCTTTACATTACAAACCATCATTACTATGTGCATCAGCGATTTATGTCGCTAGATGTACCCTGCATTTGGCCCCAGCATGGACCCCACTTCTATGCAAGCATTCTAAGTATCAAGAATTTCAGATCAGGGATTGTGCTGATATGATTTTGGGATTTCATCAAGCTGCAAGGAAAGCAGTTTTGAGAGTTACATATGACAAATACACTAGCAGTAAAAACTGCAAAGTTGCATTGATCAATCCTCTGGATAGGCTTCCACCGCCATAG 1977 40.36 MVAVKGLSTSKVRVSGERETRKTGGVRSLKVYEEDAKVKITRRDHGAADTKRKAVPVKAEISRINADCQKEALNKLDKINGKLINSAQTKVGRKVLSDISNSQGIFQKKTAADGSKPGKGKMEKMTYSQRASISLGKDLKVFNSNPKTRGQDIGKGKMERMTHSQRTSISLGKDLKVFNGNSKTRTQDTVANVTRKSAMTYCPPQRKSLPVLKHVDKEEKSDIKKGNKDTKLKNKDKHGFFVKPKVGTTVVPQVSKTQDYRWKNRASDGYLKMASDGQPTGDKQRLSRISMKPTVKTTVGIPKAQRVSRHSSVFTKSTSTTSVLSKKNETSKSESVSRKQIAHDVTLDASTSKLTAKGKSGRRKSYTSMLMERTKLLKDQVSVTKEEILPNIYDDSNQLEVAEYVDEIYQHYWVTEANNQPLKNYMENQTDITPQMRGILINWLIEVHMKFDLMQETLYLMVTLLDFYLSAVTIKRSEMQLVGLTSLLLASKYEDFWHPKVMELISISAETYTREQMLEMETTILRTLHFRLNLPTPYVFMLRFLRAAQGDKKFEKLAYFLIELCLVEYDALHYKPSLLCASAIYVARCTLHLAPAWTPLLCKHSKYQEFQIRDCADMILGFHQAARKAVLRVTYDKYTSSKNCKVALINPLDRLPPP 658
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr02g06572 658 FunFam putative cyclin-B3-1 isoform X3 531 656 - -
Amtr02g06572 658 SUPERFAMILY Cyclin-like 535 654 IPR036915 -
Amtr02g06572 658 MobiDBLite consensus disorder prediction 141 160 - -
Amtr02g06572 658 SMART Cyclin-C-2 535 652 IPR004367 -
Amtr02g06572 658 MobiDBLite consensus disorder prediction 304 340 - -
Amtr02g06572 658 Gene3D - 527 655 - -
Amtr02g06572 658 MobiDBLite consensus disorder prediction 304 330 - -
Amtr02g06572 658 Pfam Cyclin, C-terminal domain 535 651 IPR004367 -
Amtr02g06572 658 Pfam Cyclin, N-terminal domain 407 533 IPR006671 -
Amtr02g06572 658 PANTHER CYCLINS 388 639 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Amtr02g06572 658 FunFam Cyclin N-terminal domain containing 2 422 530 - -
Amtr02g06572 658 CDD CYCLIN-CCNB1-like-rpt1 401 530 - -
Amtr02g06572 658 SUPERFAMILY Cyclin-like 397 533 IPR036915 -
Amtr02g06572 658 Gene3D - 422 526 - -
Amtr02g06572 658 MobiDBLite consensus disorder prediction 1 25 - -
Amtr02g06572 658 SMART cyclin-7 442 526 IPR013763 -
Amtr02g06572 658 SMART cyclin-7 539 621 IPR013763 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr02g06572 K21777 G2/mitotic-specific cyclin-B, other
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Event-related genes

Select Gene_1 Gene_2 Event_name
359057 Amtr02g04203 Amtr02g06572
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Amtr Amtr-Chr2:119206165 Amtr08g03057 Amtr-Chr8:81652611 dispersed
Amtr Amtr-Chr2:83009989 Amtr02g06572 Amtr-Chr2:119206165 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Amtr01g00273 ACH,WGDA 12 423 Core Cell Cycle gene family AT2G17620 59.005 2.70e-160 457.0
Amtr01g01574 ACH,WGDA 64 358 Core Cell Cycle gene family AT5G67260 45.367 6.38e-75 234.0
Amtr01g03375 . 1 220 Core Cell Cycle gene family AT5G48820 44.934 1.77e-42 141.0
Amtr01g04411 . 89 195 Core Cell Cycle gene family AT1G49620 39.837 1.78e-22 88.6
Amtr01g04461 ACH,WGDA 18 348 Core Cell Cycle gene family AT5G67260 47.826 5.23e-98 293.0
Amtr01g05467 . 1 460 Core Cell Cycle gene family AT1G44110 59.579 0.0 550.0
Amtr01g05525 . 128 208 Core Cell Cycle gene family AT1G44110 44.444 1.81e-14 64.7
Amtr01g05685 . 7 304 Core Cell Cycle gene family AT4G37630 32.237 1.76e-33 123.0
Amtr01g06569 . 18 366 Core Cell Cycle gene family AT5G10270 52.571 2.70e-118 357.0
Amtr01g06999 . 21 364 Core Cell Cycle gene family AT5G10270 46.11 1.74e-96 303.0
Amtr01g07066 WGDA 80 338 Core Cell Cycle gene family AT2G22490 52.273 2.85e-78 242.0
Amtr01g08324 . 18 389 Core Cell Cycle gene family AT5G10270 44.086 5.01e-101 314.0
Amtr01g08419 . 180 222 Core Cell Cycle gene family AT5G48820 58.14 4.11e-13 64.7
Amtr01g08516 . 12 304 Core Cell Cycle gene family AT1G76540 29.773 4.75e-43 151.0
Amtr01g08528 . 12 304 Core Cell Cycle gene family AT1G76540 32.063 2.78e-41 147.0
Amtr01g08540 WGDA 43 323 Core Cell Cycle gene family AT4G37630 34.932 8.57e-46 156.0
Amtr01g08868 ACH 33 429 Core Cell Cycle gene family AT1G20610 54.791 1.71e-148 426.0
Amtr02g00519 . 11 309 Core Cell Cycle gene family AT1G20930 86.288 0.0 554.0
Amtr02g01064 . 8 302 Core Cell Cycle gene family AT3G54180 25.519 7.13e-13 67.8
Amtr02g01845 . 17 371 Core Cell Cycle gene family AT5G64960 43.169 4.61e-93 298.0
Amtr02g02004 . 20 312 Core Cell Cycle gene family AT1G76540 34.237 3.65e-55 183.0
Amtr02g02302 . 44 291 Core Cell Cycle gene family AT5G65420 38.951 4.92e-53 174.0
Amtr02g02344 ACH 3 354 Core Cell Cycle gene family AT5G43080 47.671 2.54e-112 329.0
Amtr02g02889 WGDA 91 194 Core Cell Cycle gene family AT1G49620 44.954 2.78e-20 82.4
Amtr02g04203 WGDA 51 647 Core Cell Cycle gene family AT1G16330 44.668 7.66e-159 470.0
Amtr02g04466 WGDA 1 430 Core Cell Cycle gene family AT1G76310 53.721 2.76e-150 431.0
Amtr02g05420 . 18 366 Core Cell Cycle gene family AT5G10270 51.282 2.48e-114 350.0
Amtr02g05472 . 1 279 Core Cell Cycle gene family AT4G03270 44.674 1.53e-65 206.0
Amtr02g06033 . 18 365 Core Cell Cycle gene family AT5G10270 51.714 5.52e-117 355.0
Amtr02g06061 . 248 505 Core Cell Cycle gene family AT5G10270 67.041 2.61e-105 313.0
Amtr02g06062 . 1 207 Core Cell Cycle gene family AT5G64960 88.942 1.27e-131 378.0
Amtr02g06572 WGDA 92 647 Core Cell Cycle gene family AT1G16330 46.827 1.33e-152 454.0
Amtr02g06828 . 18 371 Core Cell Cycle gene family AT5G10270 53.239 1.05e-121 370.0
Amtr02g07140 WGDA 68 321 Core Cell Cycle gene family AT5G67260 46.923 7.55e-73 227.0
Amtr02g07547 ACH 19 304 Core Cell Cycle gene family AT1G76540 25.749 4.38e-26 105.0
Amtr02g07619 . 21 333 Core Cell Cycle gene family AT5G10270 46.562 1.84e-87 278.0
Amtr02g08499 . 1 294 Core Cell Cycle gene family AT3G48750 36.027 9.95e-62 197.0
Amtr03g00789 . 288 353 Core Cell Cycle gene family AT5G43080 50.0 5.37e-17 71.2
Amtr03g01089 . 8 478 Core Cell Cycle gene family AT4G28980 55.115 2.99e-178 506.0
Amtr03g01752 . 1 290 Core Cell Cycle gene family AT3G48750 38.095 8.98e-69 219.0
Amtr03g01824 WGDA 1 434 Core Cell Cycle gene family AT5G25380 51.046 1.55e-149 432.0
Amtr03g03235 WGDA 80 338 Core Cell Cycle gene family AT2G22490 49.43 1.51e-76 237.0
Amtr03g04524 . 18 379 Core Cell Cycle gene family AT5G10270 46.486 4.30e-108 334.0
Amtr03g05067 WGDA 18 286 Core Cell Cycle gene family AT4G34160 46.099 1.85e-78 243.0
Amtr03g05086 ACH 7 353 Core Cell Cycle gene family AT5G43080 56.742 9.18e-142 404.0
Amtr03g05502 . 196 353 Core Cell Cycle gene family AT5G43080 52.532 1.14e-57 182.0
Amtr03g05694 ACH 16 459 Core Cell Cycle gene family AT1G80370 50.0 2.49e-141 410.0
Amtr03g05882 . 18 357 Core Cell Cycle gene family AT5G10270 52.047 7.25e-116 352.0
Amtr03g05957 . 199 310 Core Cell Cycle gene family AT1G20930 45.455 9.30e-31 110.0
Amtr03g06527 . 20 366 Core Cell Cycle gene family AT5G10270 44.034 5.73e-93 293.0
Amtr03g06858 . 6 300 Core Cell Cycle gene family AT5G65420 42.089 9.96e-66 207.0
Amtr04g00262 . 20 307 Core Cell Cycle gene family AT1G76540 35.517 1.68e-57 190.0
Amtr04g00584 . 10 290 Core Cell Cycle gene family AT3G48750 36.395 3.04e-56 184.0
Amtr04g01074 ACH,WGDA 1 222 Core Cell Cycle gene family AT5G48820 44.493 1.61e-47 153.0
Amtr04g01107 ACH 99 273 Core Cell Cycle gene family AT5G27620 27.027 3.40e-12 63.5
Amtr04g04000 . 1 294 Core Cell Cycle gene family AT3G48750 37.838 2.45e-70 219.0
Amtr04g04251 . 3 301 Core Cell Cycle gene family AT3G54180 28.28 7.16e-29 113.0
Amtr04g04309 WGDA 1 434 Core Cell Cycle gene family AT5G25380 50.84 3.60e-151 436.0
Amtr05g00214 . 1 467 Core Cell Cycle gene family AT5G10270 72.083 0.0 685.0
Amtr05g01240 . 4 284 Core Cell Cycle gene family AT5G02110 32.302 5.10e-38 137.0
Amtr05g01255 . 27 437 Core Cell Cycle gene family AT5G06150 52.214 9.25e-148 426.0
Amtr05g01378 . 10 290 Core Cell Cycle gene family AT3G48750 36.519 1.17e-56 186.0
Amtr05g01788 WGDA 1 82 Core Cell Cycle gene family AT2G27960 96.341 3.34e-57 169.0
Amtr05g03409 WGDA 72 322 Core Cell Cycle gene family AT4G37630 35.827 2.65e-45 155.0
Amtr05g04071 ACH,WGDA 1 353 Core Cell Cycle gene family AT5G43080 56.64 2.76e-140 400.0
Amtr05g04733 . 18 419 Core Cell Cycle gene family AT5G64960 43.243 6.37e-104 323.0
Amtr05g05252 . 40 303 Core Cell Cycle gene family AT5G65420 43.321 1.35e-64 205.0
Amtr05g05565 WGDA 18 430 Core Cell Cycle gene family AT1G76310 59.286 8.73e-167 474.0
Amtr06g00167 . 1 367 Core Cell Cycle gene family AT5G67260 41.927 1.46e-90 275.0
Amtr06g00402 . 207 305 Core Cell Cycle gene family AT5G10270 66.667 8.23e-43 145.0
Amtr06g01677 . 6 390 Core Cell Cycle gene family AT1G18040 76.744 0.0 593.0
Amtr06g02097 . 1 317 Core Cell Cycle gene family AT5G27620 59.561 9.60e-137 389.0
Amtr06g02474 ACH,WGDA 1 222 Core Cell Cycle gene family AT5G48820 42.609 5.93e-46 150.0
Amtr06g02774 . 150 195 Core Cell Cycle gene family AT1G49620 69.565 8.75e-20 76.6
Amtr06g02775 . 150 195 Core Cell Cycle gene family AT1G49620 71.739 1.05e-20 80.1
Amtr06g04417 . 150 193 Core Cell Cycle gene family AT1G49620 68.182 5.90e-19 78.2
Amtr06g04451 WGDA 14 286 Core Cell Cycle gene family AT4G34160 50.0 1.79e-93 281.0
Amtr06g05788 . 8 497 Core Cell Cycle gene family AT1G02970 55.446 0.0 546.0
Amtr06g05885 . 1 982 Core Cell Cycle gene family AT3G12280 67.535 0.0 1354.0
Amtr07g00488 . 1 435 Core Cell Cycle gene family AT5G25380 46.947 1.14e-133 391.0
Amtr07g00807 . 18 474 Core Cell Cycle gene family AT5G10270 43.59 1.57e-117 357.0
Amtr07g01769 . 18 363 Core Cell Cycle gene family AT5G10270 51.009 2.55e-117 355.0
Amtr07g01881 . 1 294 Core Cell Cycle gene family AT3G48750 36.364 1.21e-66 213.0
Amtr07g02464 WGDA 29 377 Core Cell Cycle gene family AT2G26760 54.377 6.20e-144 413.0
Amtr07g03514 . 20 312 Core Cell Cycle gene family AT1G76540 34.915 1.56e-56 187.0
Amtr07g03531 . 18 376 Core Cell Cycle gene family AT5G10270 50.0 1.30e-117 360.0
Amtr07g04836 . 26 349 Core Cell Cycle gene family AT5G10270 42.901 1.41e-84 270.0
Amtr07g05343 . 149 195 Core Cell Cycle gene family AT1G49620 61.702 1.28e-17 74.7
Amtr07g05450 ACH 57 366 Core Cell Cycle gene family AT5G67260 46.037 2.91e-91 276.0
Amtr08g00574 ACH 19 304 Core Cell Cycle gene family AT1G76540 26.113 2.40e-27 109.0
Amtr08g00668 . 18 363 Core Cell Cycle gene family AT5G10270 49.143 2.08e-111 340.0
Amtr08g00783 ACH,WGDA 1 353 Core Cell Cycle gene family AT5G43080 56.764 4.59e-146 416.0
Amtr08g03057 . 12 426 Core Cell Cycle gene family AT2G17620 59.102 4.65e-153 438.0
Amtr08g03058 WGDA 132 429 Core Cell Cycle gene family AT1G20610 55.96 3.25e-118 347.0
Amtr08g03544 ACH,WGDA 11 348 Core Cell Cycle gene family AT5G67260 44.258 2.31e-85 261.0
Amtr08g03574 . 150 194 Core Cell Cycle gene family AT1G49620 60.0 7.68e-16 67.4
Amtr08g03756 . 18 358 Core Cell Cycle gene family AT5G10270 47.801 8.71e-108 331.0
Amtr08g04940 . 10 290 Core Cell Cycle gene family AT3G48750 34.828 1.64e-57 187.0
Amtr08g05265 . 1 474 Core Cell Cycle gene family AT5G10270 76.033 0.0 711.0
Amtr08g05279 . 18 470 Core Cell Cycle gene family AT5G63610 75.0 0.0 697.0
Amtr09g00287 . 14 304 Core Cell Cycle gene family AT1G76540 26.239 1.62e-28 112.0
Amtr09g00649 WGDA 1 80 Core Cell Cycle gene family AT2G27970 91.463 4.80e-53 158.0
Amtr09g02568 . 17 371 Core Cell Cycle gene family AT5G64960 43.443 2.51e-93 299.0
Amtr09g03046 . 20 290 Core Cell Cycle gene family AT1G66750 29.653 5.17e-28 114.0
Amtr09g03770 . 11 315 Core Cell Cycle gene family AT1G20930 85.574 0.0 555.0
Amtr10g00087 WGDA 12 334 Core Cell Cycle gene family AT1G70210 59.327 1.72e-129 371.0
Amtr10g00431 WGDA 204 392 Core Cell Cycle gene family AT1G20610 31.25 1.18e-22 98.6
Amtr10g00812 . 1 294 Core Cell Cycle gene family AT3G48750 86.735 0.0 538.0
Amtr10g04027 . 319 354 Core Cell Cycle gene family AT5G43080 58.333 3.39e-09 49.3
Amtr10g04111 WGDA 12 339 Core Cell Cycle gene family AT1G70210 58.559 1.47e-123 356.0
Amtr10g04624 WGDA 200 370 Core Cell Cycle gene family AT5G11300 32.386 9.79e-19 87.0
Amtr11g00467 . 18 363 Core Cell Cycle gene family AT5G10270 51.873 5.48e-120 362.0
Amtr11g00596 . 1 290 Core Cell Cycle gene family AT3G48750 36.86 5.47e-67 214.0
Amtr11g01431 WGDA 18 377 Core Cell Cycle gene family AT2G26760 56.284 6.62e-142 407.0
Amtr11g01856 . 20 312 Core Cell Cycle gene family AT1G76540 35.254 1.49e-56 188.0
Amtr11g02704 . 223 365 Core Cell Cycle gene family AT1G76310 23.926 5.82e-06 46.2
Amtr11g02883 . 18 367 Core Cell Cycle gene family AT5G10270 47.293 5.12e-112 344.0
Amtr11g03109 ACH 52 269 Core Cell Cycle gene family AT1G70210 46.818 1.07e-54 177.0
Amtr11g03184 WGDA 150 195 Core Cell Cycle gene family AT1G49620 65.217 2.20e-18 77.8
Amtr12g00285 . 2 309 Core Cell Cycle gene family AT3G54180 80.844 0.0 515.0
Amtr12g00675 . 27 436 Core Cell Cycle gene family AT5G06150 53.271 2.13e-148 428.0
Amtr12g00942 . 1 294 Core Cell Cycle gene family AT3G48750 35.354 3.82e-61 196.0
Amtr12g00943 . 1 294 Core Cell Cycle gene family AT3G48750 35.354 4.30e-61 195.0
Amtr12g00944 . 1 294 Core Cell Cycle gene family AT3G48750 35.69 2.35e-61 196.0
Amtr12g01057 ACH 1 221 Core Cell Cycle gene family AT5G48820 39.301 5.09e-34 118.0
Amtr12g01087 ACH 55 273 Core Cell Cycle gene family AT5G27620 24.017 6.05e-12 62.8
Amtr12g01470 . 1 294 Core Cell Cycle gene family AT3G48750 37.919 5.73e-62 196.0
Amtr12g01478 . 1 294 Core Cell Cycle gene family AT3G48750 35.906 8.13e-59 188.0
Amtr12g01506 . 1 287 Core Cell Cycle gene family AT3G48750 39.175 5.99e-61 198.0