AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr02g06604 ATGAGGGTTCAATTATCTCGTAACTTCTTCACCTTATCCTTCAATCATCCGTTACTCAAATCACATCGAAACAATAATCTCTTCACTCGGTTTAATCAATCAACTCTCGCTTCAATACAACACTCTTCCTACGTCATGGGCTCTCAACCAGTCGAATGGCCGGCTAACAAAGTCAGGGACTCGTTTATTAAGTTTTTTGAAGAACGGAATCATGTGTATTGGAAATCGAGCCCTGTTGTTCCTGTCAATGATCCTACTCTGCTATTTGCTAATGCTGGAATGAATCAGTACAAGCCTATTTTCTTGGGTACTGTTGACCCTAACACTGCTTTAAGCAAACTTTCCCGTGCCTGCAACACCCAGAAATGCATTCGAGCTGGTGGGAAGCATAATGATCTTGATGATGTTGGCAAAGACACTTATCATCACACTTTTTTTGAAATGCTTGGTAATTGGTCGTTTGGTGATTATTTTAAAGAGGAAGCCATTGGTTGGGCTTGGGAACTTCTCACAAAGGTTTATAAGCTACCTACTGATCGGATATATGCTACTTATTTTGGTGGTGATGAGAAATTAGGTCTTCCTGCTGATACTGAAGCTAGAGATATATGGCTCAAGTATCTGCCATCTGCACGGGTTCTGCCATTTGGTTGTAAAGACAATTTTTGGGAGATGGGTGACACTGGACCTTGTGGACCCTGTACTGAAATACACTTCGATAGAATTGGTGGTCGTGATGCTGCTGAGTTGGTTAATAACGATGACCCTACATTGATTGAAATATGGAATAATGTGTTTATTCAGTTTAATAGGGAAGCTGATGGTTCCTTGAAACCTCTGCCTGCCAAACATGTGGATACTGGAATGGGTTTTGAAAGATTAACTTCAATTCTTCAGAACAAAATGAGCAACTATGATACTGATATTTTCATACCTATTTTTGATGCAATCCAAGAGGCAACTGGTGCTAGACCATATTCAGGCAAAGTGGGCCCAGATGATGTGGATGGAATTGACATGGCATACAGAGTTGTTGCTGACCACATCAGAACTCTTTCATTTGCCATTGCAGATGGTTCTTGTCCAGGAAACGAAGGGCGCGAATATGTTTTGAGGCGCATTCTTCGCCGAGCTGTACGTTATGGAACAGAAGTACTGAAAGCACAACAAGGATTTTTTAATGGATTGGTAAAAGTTGTGGTGGATGTAATGGGCCATGTTTTTCCTGAGCTAAAACAACAAGAGGCACACATTAGAGAGATTATAGCTGAAGAGGAAGCAAGTTTTGGGAGGACTTTACTTCATGGAATTGAGAAGTTTAAGAAGACAGCTCAAGATGTTCAGGGAAAGATATTTAGTGGACAGGATGCATTTGTTTTGTGGGATACTTATGGATTCCCATTGGATCTGACTCAGTTGATGGCAGAAGAAAGAGGGTTGGTAGTTGATGTTGAGGGCTTTAATATTGCTATGAGTGAAGCTAGAGAAAGATCAAGAAATGCCCAGAATAAGCAAGCTGCTGTTACAATTGTTATGGATGCAGATGCCACCTCAGCATTGCATAAGAGAGGGGTGGCTACAACAAATGATAGTTTCAAGTTTACATGGTTTAAGGACCACAAAAGTGTGATAAAAGCCATTTACACAGGTTCTGAGTATGTGGACCGTGCTGATGCTGGCGATGATGTTGGCATAATTCTTGAGAGCACTAGTTTTTATGCTGAGCAAGGTGGTCAGATATTTGATACTGGACTACTTGGGGGCCCATCTGGATCATTTGAAGTCTGCAATGTTCAAATTTATGGTGGTTTTGTACTTCATCTTGGTAAAATTAGTGGGGAGTCAGCCCGATTTCATGTGGGTGATGAAGTAATTTGTAAGGTGGACTATGAAAGGCGTCAACGCATTGCCCCTAACCATACATGTACACACATGTTGAATTTTGCTCTCAGGGAAGTACTTGGGAGTCATGTTGACCAGAAAGGATCCATTGTTCTTCCAGAAAAATTAAGGTTTGATTTCTCCCATGGGAAACCCGTGAAACCCGAAGATCTTCGTAAGATTGAATCAATTGTGAATGAACAAATTAAAGCTGAGCTGGAGGTGTCTGCAAAGGAGGCAAGCCTTGCTGATGCAAAAAGAGTAAATGGTTTGCGGGCTGTTTTTGGTGAGGTGTACCCTGATCCAGTTAGGATTGTTGCCATTGGTCGACAAGTGGATGATTTATTGGCTGATCCTGAAAATGAAGAATGGTCTTCCATATCTGCAGAGCTATGTGGCGGGACCCATATTTCAAATACACGTGAGGCAAAAGCATTTGCTCTTTTGTCTGAGGAGGGAATTGCCAAGGGGATTAGGAGAGTTACTGCTGTAACAACAGACTATGCTTTTGAAGCTATTAAAAAGGCATCTGAGCTTGAGCTGGAAGTTGACCAGGCATCTAAGCTGGAAGGAAGCCTTCTTGAGCAGAAAGTGGCATCTTTGAATGGTCAAGTAGAGTCTGCCTCGATTCCAACAGCAAAGAAGACTGATCTTAAGGCAAAGATTTCCATCCTTCAGAATCAAGTAATAAAAGCAAAAAAGAAGACTGCTGAAGAGAACATACGAAAAGCTGTTGAAGCTGCCACTGAGGCAGCAGAAGTTGCATCTTCTGAGGGAAAGGCCTTCTGCATTTCGCATGTTGGTGTAGGGTCAGATACTGCTGCTATTCGTGAAGCAGTTGTCAAAGTCATGGAGCAAAAGGGAATGGCAGTGATGGTTTTTAGCACTGATGAACAGTCAAAGAAAGCACTAGTTTGTGCGGGTGTGCCAGATAAAAGCGATAAAAGCAACCATCTGAAGGTTTTAGACTGGTTAAAGGCAGCACTGAAGCCGCTGGAAGGCAAAGGTGGTGGAGGGAAAGGCGGTCTTGCTCAAGGACAGGGGCCCGATATAAAACATGTGGATGAAGCAATAGACGTTGCCAAGTCATTCGCAGCTCTCAAACTGGGCTGA 2994 42.45 MRVQLSRNFFTLSFNHPLLKSHRNNNLFTRFNQSTLASIQHSSYVMGSQPVEWPANKVRDSFIKFFEERNHVYWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTVDPNTALSKLSRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAIGWAWELLTKVYKLPTDRIYATYFGGDEKLGLPADTEARDIWLKYLPSARVLPFGCKDNFWEMGDTGPCGPCTEIHFDRIGGRDAAELVNNDDPTLIEIWNNVFIQFNREADGSLKPLPAKHVDTGMGFERLTSILQNKMSNYDTDIFIPIFDAIQEATGARPYSGKVGPDDVDGIDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGTEVLKAQQGFFNGLVKVVVDVMGHVFPELKQQEAHIREIIAEEEASFGRTLLHGIEKFKKTAQDVQGKIFSGQDAFVLWDTYGFPLDLTQLMAEERGLVVDVEGFNIAMSEARERSRNAQNKQAAVTIVMDADATSALHKRGVATTNDSFKFTWFKDHKSVIKAIYTGSEYVDRADAGDDVGIILESTSFYAEQGGQIFDTGLLGGPSGSFEVCNVQIYGGFVLHLGKISGESARFHVGDEVICKVDYERRQRIAPNHTCTHMLNFALREVLGSHVDQKGSIVLPEKLRFDFSHGKPVKPEDLRKIESIVNEQIKAELEVSAKEASLADAKRVNGLRAVFGEVYPDPVRIVAIGRQVDDLLADPENEEWSSISAELCGGTHISNTREAKAFALLSEEGIAKGIRRVTAVTTDYAFEAIKKASELELEVDQASKLEGSLLEQKVASLNGQVESASIPTAKKTDLKAKISILQNQVIKAKKKTAEENIRKAVEAATEAAEVASSEGKAFCISHVGVGSDTAAIREAVVKVMEQKGMAVMVFSTDEQSKKALVCAGVPDKSDKSNHLKVLDWLKAALKPLEGKGGGGKGGLAQGQGPDIKHVDEAIDVAKSFAALKLG 997
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr02g06604 997 SMART tRNA-SAD-4 730 789 IPR012947 GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro)
Amtr02g06604 997 NCBIfam alanine--tRNA ligase 57 975 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Amtr02g06604 997 Gene3D - 629 805 - -
Amtr02g06604 997 SUPERFAMILY Class II aaRS and biotin synthetases 54 305 IPR045864 -
Amtr02g06604 997 FunFam Alanine--tRNA ligase, cytoplasmic 52 302 - -
Amtr02g06604 997 Gene3D Bira Bifunctional Protein; Domain 2 54 302 IPR045864 -
Amtr02g06604 997 FunFam Alanine--tRNA ligase 884 992 - -
Amtr02g06604 997 SUPERFAMILY Translation proteins 559 628 IPR009000 -
Amtr02g06604 997 Gene3D - 555 628 - -
Amtr02g06604 997 FunFam Alanine--tRNA ligase 527 627 - -
Amtr02g06604 997 Coils Coil 842 874 - -
Amtr02g06604 997 PANTHER ALANYL-TRNA SYNTHETASE 51 993 IPR050058 GO:0002161(PANTHER)|GO:0004813(PANTHER)|GO:0005739(PANTHER)|GO:0006419(PANTHER)|GO:0009507(PANTHER)
Amtr02g06604 997 Pfam tRNA synthetases class II (A) 57 632 IPR018164 GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro)
Amtr02g06604 997 Gene3D - 883 992 - -
Amtr02g06604 997 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 53 802 IPR018165 GO:0003676(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro)
Amtr02g06604 997 Pfam DHHA1 domain 845 991 IPR003156 GO:0003676(InterPro)
Amtr02g06604 997 Hamap Alanine--tRNA ligase [alaS]. 53 996 IPR023033 GO:0004813(InterPro)
Amtr02g06604 997 FunFam Alanine--tRNA ligase, cytoplasmic 629 804 - -
Amtr02g06604 997 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 306 506 IPR018162 GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006419(InterPro)
Amtr02g06604 997 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 730 788 IPR012947 GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro)
Amtr02g06604 997 PRINTS Alanyl-tRNA synthetase signature 259 270 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Amtr02g06604 997 PRINTS Alanyl-tRNA synthetase signature 131 142 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Amtr02g06604 997 PRINTS Alanyl-tRNA synthetase signature 367 380 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Amtr02g06604 997 PRINTS Alanyl-tRNA synthetase signature 343 359 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Amtr02g06604 997 PRINTS Alanyl-tRNA synthetase signature 286 299 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Amtr02g06604 997 CDD AlaRS-core 55 301 - -
Amtr02g06604 997 SUPERFAMILY ThrRS-AlaRS common domain 628 800 IPR018163 GO:0000166(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr02g06604 K01872 alanyl-tRNA synthetase [EC:6.1.1.7]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
199617 Amtr Amtr02g06604 Amtr-Chr2:119652957 Amtr10g02853 Amtr-Chr10:61711423