AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr02g06673 ATGGCGAAGATCATGCTAGGGTGCGAGCCAGCCATCGGATCATTAACGCCGTCAAAGAAAAGAGATTACAGAGTAACAAACAGGTTACAAGAAGGCAAACGTCCGATATACGCCGTCGTTTTCAACTTCATTGACTCTCGTTATTATAACGTATTCGCCACCGTTGGCGGTAATCGCGTTACTGTATACCAATGCCTTGAAGGTGGTGTTATTGCTGTACTTCAGTCCTATATTGACGATGATAAGGATGAGTCTTTCTACACTGTGAGTTGGGCTTGTGATGCTGATGGGACACCATTGCTAGTAGCTGGAGGAATCAATGGTATAATCCGTGTCATTGATGCTGGCAATGAGAAGATACACAAGAGTTTTGTTGGTCATGGGGACTCAGTAAATGAAATTAGAACACAAGCCCTAAGACCTTCTCTAGTGCTATCTGCAAGTAAAGATGAATCTGTTCGCTTGTGGAATGTTCAAACTGGAATATGCATTTTGATATTTGCTGGAGCTGGTGGTCATCGCAATGAAGTATTGAGTGTGGATTTTCACCCTTCAGATATATATCGTATTGCCAGTTGCGGGATGGATAACACCGTAAAGATCTGGTCAATGAAAGAATTTTGGACATATGTTGAGAGATCTTTTACATGGGAGGGACTTCCTTCGCAGTTTCCTACAAAATATGTGCAATTTCCGGTATTAATTGCTTCAATTCATACAAATTATGTCGACTGCAATAGGTGGCTTGGTGATTTCATACTATCTAAGAGTGTAGACAATGAGTTCATATTGTGGGAGCCAAAGATGAAAGAGCAGTCTCCAGGAGAGGGCACAGTGGATATTCTTCAGAAATATCCTGTCCCTGATTGTGACATCTGGTTTATAAAGCTTTCCTGTGATTTCCATTACAATGCAGCAGCTATAGGGAACAGGGAAGGAAAAATCTATGTATGGGAATTGCAGACTAGCCCGCCTTCTCTAATTGCAAGGTTATCTCATGTTCAGTCCAAATCACCCATCAGGCAAACTGCCATGTCATTTGATGGAAGCACAATTCTGAGCTGCTGTGAAGATGGCACCATCTGGCGTTGGGATACCGTTGCAACCTCGTAG 1113 42.59 MAKIMLGCEPAIGSLTPSKKRDYRVTNRLQEGKRPIYAVVFNFIDSRYYNVFATVGGNRVTVYQCLEGGVIAVLQSYIDDDKDESFYTVSWACDADGTPLLVAGGINGIIRVIDAGNEKIHKSFVGHGDSVNEIRTQALRPSLVLSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVERSFTWEGLPSQFPTKYVQFPVLIASIHTNYVDCNRWLGDFILSKSVDNEFILWEPKMKEQSPGEGTVDILQKYPVPDCDIWFIKLSCDFHYNAAAIGNREGKIYVWELQTSPPSLIARLSHVQSKSPIRQTAMSFDGSTILSCCEDGTIWRWDTVATS 370
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr02g06673 370 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 170 205 - -
Amtr02g06673 370 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 124 161 - -
Amtr02g06673 370 SMART WD40-4 160 203 IPR001680 GO:0005515(InterPro)
Amtr02g06673 370 SMART WD40-4 278 319 IPR001680 GO:0005515(InterPro)
Amtr02g06673 370 SMART WD40-4 67 114 IPR001680 GO:0005515(InterPro)
Amtr02g06673 370 SMART WD40-4 22 64 IPR001680 GO:0005515(InterPro)
Amtr02g06673 370 SMART WD40-4 117 157 IPR001680 GO:0005515(InterPro)
Amtr02g06673 370 SMART WD40-4 324 365 IPR001680 GO:0005515(InterPro)
Amtr02g06673 370 SMART WD40-4 229 266 IPR001680 GO:0005515(InterPro)
Amtr02g06673 370 PRINTS G protein beta WD-40 repeat signature 190 204 IPR020472 -
Amtr02g06673 370 PRINTS G protein beta WD-40 repeat signature 352 366 IPR020472 -
Amtr02g06673 370 PRINTS G protein beta WD-40 repeat signature 144 158 IPR020472 -
Amtr02g06673 370 PANTHER POLYCOMB PROTEIN 9 366 IPR051243 GO:0000122(PANTHER)|GO:0006342(PANTHER)|GO:0031491(PANTHER)|GO:0035098(PANTHER)
Amtr02g06673 370 ProSitePatterns Trp-Asp (WD) repeats signature. 144 158 IPR019775 -
Amtr02g06673 370 ProSiteProfiles Trp-Asp (WD) repeats profile. 170 205 IPR001680 GO:0005515(InterPro)
Amtr02g06673 370 Pfam WD domain, G-beta repeat 121 157 IPR001680 GO:0005515(InterPro)
Amtr02g06673 370 Pfam WD domain, G-beta repeat 333 365 IPR001680 GO:0005515(InterPro)
Amtr02g06673 370 Pfam WD domain, G-beta repeat 172 203 IPR001680 GO:0005515(InterPro)
Amtr02g06673 370 SUPERFAMILY WD40 repeat-like 26 365 IPR036322 GO:0005515(InterPro)
Amtr02g06673 370 Gene3D - 19 368 IPR015943 GO:0005515(InterPro)
Amtr02g06673 370 FunFam polycomb group protein FIE1 19 368 - -
Amtr02g06673 370 ProSiteProfiles Trp-Asp (WD) repeats profile. 124 166 IPR001680 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr02g06673 K11462 polycomb protein EED
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Event-related genes

Select Gene_1 Gene_2 Event_name
359044 Amtr02g04176 Amtr02g06673
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
199677 Amtr Amtr02g06673 Amtr-Chr2:120450257 Amtr04g01359 Amtr-Chr4:21899275
298054 Amtr Amtr02g04176 Amtr-Chr2:82736460 Amtr02g06673 Amtr-Chr2:120450257