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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr02g06763 ATGCAACCATCAAAACCCTTACCAGATTCCGACCTACCACCAATCGCCTCCATCAAACTCAAATCCTCCTCCCCTAACCACCACCACCACCGTCCCACCACCACTCCCGCCACCCCTACCACCGCCGCCCAACGCCGCATCGGCATCGCCGTCGACCTCTCCGACGAGAGCGCCTTCGCCGTTAACTGGGCCGTTAACCAGTACCTCCGTCCAGGCGACGCCGTCATCCTCATCCACGTCCGTCCTACTTCCGTCCTGTACGGCGCTGACTGGGGCTCCGTTGACCAGTCAACGATCGTTGACCCTAACAACGAAGAGGATAAACTTAAGTTAGAAGATGATTTCAATACTTTTACTATTACTAAATCTGCTGACCTGGCACAGCCTCTGGTGGACGCGCACATACCGTATAAGATACATATTGTGAAAGATCATGATATGAAGGAGAGGCTGTGTTTGGAGGTGGAGAGGTTAGGGTTAAGTGCGGTTATTATGGGGAGTAGAGGGTTTGGTGCCAGGAGTAAGAGAGGGAGCGATGATGATGGGAGGTTAGGGAGTGTTAGTGATTATTGTGTTAGGCATTGTGTTTGTCCGGTTGTCGTTGTTAGGTATCCGGATGAGAAGGAGGCGGCTGTGGCCGGTGGGGCCGTTGTTTCCGTTGGTTCGATTGATTCCGGTGTGGATGATGAGGATGAGGCTGTGTTTGTTGATGCGGTTGACGACCGGAAATGA 732 53.01 MQPSKPLPDSDLPPIASIKLKSSSPNHHHHRPTTTPATPTTAAQRRIGIAVDLSDESAFAVNWAVNQYLRPGDAVILIHVRPTSVLYGADWGSVDQSTIVDPNNEEDKLKLEDDFNTFTITKSADLAQPLVDAHIPYKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGARSKRGSDDDGRLGSVSDYCVRHCVCPVVVVRYPDEKEAAVAGGAVVSVGSIDSGVDDEDEAVFVDAVDDRK 243
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr02g06763 243 MobiDBLite consensus disorder prediction 1 42 - -
Amtr02g06763 243 PRINTS Universal stress protein signature 181 203 IPR006015 -
Amtr02g06763 243 PRINTS Universal stress protein signature 44 62 IPR006015 -
Amtr02g06763 243 Gene3D HUPs 38 213 IPR014729 -
Amtr02g06763 243 Pfam Universal stress protein family 45 203 IPR006016 -
Amtr02g06763 243 PANTHER OS01G0783500 PROTEIN 8 239 IPR044162 -
Amtr02g06763 243 CDD USP-Like 46 202 - -
Amtr02g06763 243 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 45 206 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr02g06763 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
359040 Amtr02g04158 Amtr02g06763
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Amtr Amtr-Chr2:122685573 Amtr10g02389 Amtr-Chr10:47976875 dispersed
Amtr Amtr-Chr8:128683894 Amtr02g06763 Amtr-Chr2:122685573 transposed
Amtr Amtr-Chr2:82427533 Amtr02g06763 Amtr-Chr2:122685573 wgd