AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr02g06772 ATGGCAACTAGCAATAAAAGGTCGTTTCTAGTGGTTTTGGCAACAATTGCTGTATTGGGTGCACTCACACAAGTAAAAGCTTATTCAAGCTATTACTGTAGCACGTGGTCCCGTTGCCAGGGCCAAACCCTTTATTGCCCTTCAGAGTGCCCCTCTAGCGACTCCAACGACCCACAAGCTAAAGTTTGTCGTATCGATTGTTATTCTCCAAAATGCAAAGCCGAATGCAAACAGCGTAAACCAAACTGCAACAGCCCGGGGTCAGCATGCTACGACCCACGCTTCATCGGTGGAGACGGCATTGTGTTCTACTTCCACGGAAAGGTCAACGAGCATTTCAGCTTGATCTCCGACACCAACCTCCAAATCAACGGCCGATTTATCGGCCACAGGCCCATGGGCCGATCCAGGGACTTCACCTGGATCCAAGCCCTGGGACTCCTTTTCAACTCCCACACCTTCTCTCTAGAAGCCACAAAATCTGCCACATGGGACAGCGAAATCGACCACCTTAAACTCTCATTCGATGGAGAAGAGATCTCTCTACCCGTTGGCGGTCTTTCCACGTGGAAATCACGTGAGGAAGAGATAAAAGTAGAGAGAACTTCCGGTGTAAACAGTGTGATGGTGACTATTCCTGGAGTTGTAGAGATTTTGGCAAATGTGGTTCCAGTGACCGCTGAAGATGACCGAATCCACGGTTACAATGTACCTTCTAATGATTGCTTTGCACATTTGGAGGTTCAGTTCAGGTTTGCAGGACTTTCTGACGGCGTTGAAGGCGTGTTGGGAAGGACATATCAACCGGATTTCAAGAACCCTGCGAAGCCTGGGGTGGCGATGGCGGTTGTGGGAGGCGAAGACAAGTATAAAACTAGCTCTTTGTTGTCGGCGGATTGCGCTAACTGTGTGTTTGATTCGAGTAATGTTGTAGGGAATGAGAAGCAGATGGTTACGTTGGATTGTTCTGCTAAAGGGTTGTTCCATGGTAATGGGATTGTTTGCAAGAAATGA 1014 48.32 MATSNKRSFLVVLATIAVLGALTQVKAYSSYYCSTWSRCQGQTLYCPSECPSSDSNDPQAKVCRIDCYSPKCKAECKQRKPNCNSPGSACYDPRFIGGDGIVFYFHGKVNEHFSLISDTNLQINGRFIGHRPMGRSRDFTWIQALGLLFNSHTFSLEATKSATWDSEIDHLKLSFDGEEISLPVGGLSTWKSREEEIKVERTSGVNSVMVTIPGVVEILANVVPVTAEDDRIHGYNVPSNDCFAHLEVQFRFAGLSDGVEGVLGRTYQPDFKNPAKPGVAMAVVGGEDKYKTSSLLSADCANCVFDSSNVVGNEKQMVTLDCSAKGLFHGNGIVCKK 337
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr02g06772 337 Pfam Root cap 249 305 IPR009646 -
Amtr02g06772 337 PANTHER ROOT CAP DOMAIN-CONTAINING PROTEIN 28 337 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr02g06772 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
359039 Amtr02g04156 Amtr02g06772
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Amtr Amtr-Chr2:122775922 Amtr10g01513 Amtr-Chr10:27292593 dispersed
Amtr Amtr-Chr2:10710367 Amtr02g06772 Amtr-Chr2:122775922 transposed
Amtr Amtr-Chr7:29610548 Amtr02g06772 Amtr-Chr2:122775922 transposed
Amtr Amtr-Chr2:82407893 Amtr02g06772 Amtr-Chr2:122775922 wgd