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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr02g06774 ATGTTAGAAGGTAAAGCGGTGATAGGGGAGACTGATATGCTTCAAGCCATGCAAGATGATGCACTTCAACTCGCAACGAAAGCACTTGATTTCTTTGATGTCACCGAGGCTACTGAAATTGCACGAGTAGTCAAACAGGAATTCGATAAGATGTATGGAGGTGGATGGCAATGTATCGTAGGGACTAATTTTGGGTCATTTGTGACCCATTGTTATGGTTCTTTCATTCATTTTTCTGTTGGGAGTCTTGCGATTTTGCTGTTTAGAGGATCATCAGTTGCTTTAGAGATTGATGAATTTTCGAGTTTGGATGGTGTAAAAACATGA 327 40.37 MLEGKAVIGETDMLQAMQDDALQLATKALDFFDVTEATEIARVVKQEFDKMYGGGWQCIVGTNFGSFVTHCYGSFIHFSVGSLAILLFRGSSVALEIDEFSSLDGVKT 108
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr02g06774 108 SMART Dynein-light-2 1 90 IPR001372 GO:0007017(InterPro)|GO:0030286(InterPro)
Amtr02g06774 108 CDD DLC-like-DYNLL1-DYNLL2 5 89 - -
Amtr02g06774 108 Gene3D Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 2 90 IPR037177 GO:0007017(InterPro)|GO:0030286(InterPro)
Amtr02g06774 108 FunFam Dynein light chain 1 90 - -
Amtr02g06774 108 SUPERFAMILY DLC 1 90 IPR037177 GO:0007017(InterPro)|GO:0030286(InterPro)
Amtr02g06774 108 PANTHER DYNEIN LIGHT CHAIN 7 89 IPR001372 GO:0005868(PANTHER)|GO:0007017(InterPro)|GO:0030286(InterPro)|GO:0045505(PANTHER)
Amtr02g06774 108 Pfam Dynein light chain type 1 5 89 IPR001372 GO:0007017(InterPro)|GO:0030286(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr02g06774 K10418 dynein light chain LC8-type
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Event-related genes

Select Gene_1 Gene_2 Event_name
359038 Amtr02g04155 Amtr02g06774
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Amtr Amtr-Chr2:105801241 Amtr02g06774 Amtr-Chr2:122850952 dispersed
Amtr Amtr-Chr2:122850952 Amtr11g02234 Amtr-Chr11:48632671 dispersed
Amtr Amtr-Chr7:371943 Amtr02g06774 Amtr-Chr2:122850952 transposed
Amtr Amtr-Chr7:37624382 Amtr02g06774 Amtr-Chr2:122850952 transposed
Amtr Amtr-Chr2:82399261 Amtr02g06774 Amtr-Chr2:122850952 wgd