AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr02g06805 ATGGCAGATCGTTTGTTGGTACATGAGGTCTCCGATCTTTGTCTCGGTAAGCCACCACTCACCTCCTTACCTATCTCCGCCACCATCGGCCACGCCCTAGCTGCACTCAAATCCTCCGACGACACCCACATCAGTATCTGGTCCTGCCACCACTCTACCACCAATCATGACTGCCGCTGTGTCGGTAAAGTATGCATGGTCGACATCATTTGCTACCTTTGCAATGAAGATAACATTGCATCGCCTTCTGTTGCTCTTAAAGCCCCCGTTTCGGTTTTGTTGTCGCGTGTTCCCGGTGTTGTTACACACGTGGAGCCCTCTTATAGTTTGCTGGAAGCCATTGATCTAATCATAAACGGTGCTCAAAACCTTGTGGTACCAATAAAGAACACAACCTCTAAACGAAAACAACTCTGGCAGCCACCATCACTTGCTCCGACAACTCATGCGGGCGGCCGCGAATTCTGCTGGTTGACACAAGAAGATGTGATCAGGTTCCTCCTCAGCTCAATCGGTTTATTTTCGCCAACCGCCACGTACTCAATCGAGTCACTCGGAATCATTGATACCAAAATCCTCACAATCAACTACCACTCACCGGCGGCAAAAGCAATCGCCGCCATTTCCACTTCTCTCGCCGACCAAACCTCCGTTGCTGTCATTGACGACGACGGAGTATTGATCGGCGAAATATCCCCCTTCACACTCACATATTGTGACGAGATGGTTGCGGCGGCGATAATGACTTTGTCCGCCGGTGACCTAATGGCGTACATAGATTGTGGTGGCCCACCTGAGGACATAACAAGAATTGTTCAAGAAAGATTAAAACAAAAAAAATTGTACGGAATGCTTGAAGAATTTTTAATTTATTCGTCTGACATTCCGTACAGTAACAGTACTAGTTCTTCATCGGGTACTTCATCCGATGAAGAAACAGTACTATCTCCTGTGACCACCATGAGATCAAGGAGGTACAACAGGTCAGACAAATTTATAATGAGGAGGGCGGAAGCTATTGTTTGCCACCCTAGAAGCTCGTTAGTGGCGGTAATGATACAAGCGATTGCGCTTCGGGTGGGTTATGCTTGGGTGATTGAGGATGATTGTACGGTGGTTGGAATTGTTAAGTTTTCCGGCATGTTGAAAGTTTTTCAGGAGCATTTGGAGAGTATGATTGACTAG 1185 47.26 MADRLLVHEVSDLCLGKPPLTSLPISATIGHALAALKSSDDTHISIWSCHHSTTNHDCRCVGKVCMVDIICYLCNEDNIASPSVALKAPVSVLLSRVPGVVTHVEPSYSLLEAIDLIINGAQNLVVPIKNTTSKRKQLWQPPSLAPTTHAGGREFCWLTQEDVIRFLLSSIGLFSPTATYSIESLGIIDTKILTINYHSPAAKAIAAISTSLADQTSVAVIDDDGVLIGEISPFTLTYCDEMVAAAIMTLSAGDLMAYIDCGGPPEDITRIVQERLKQKKLYGMLEEFLIYSSDIPYSNSTSSSSGTSSDEETVLSPVTTMRSRRYNRSDKFIMRRAEAIVCHPRSSLVAVMIQAIALRVGYAWVIEDDCTVVGIVKFSGMLKVFQEHLESMID 394
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr02g06805 394 MobiDBLite consensus disorder prediction 298 320 - -
Amtr02g06805 394 SUPERFAMILY CBS-domain pair 5 168 IPR046342 -
Amtr02g06805 394 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 18 388 IPR050511 GO:0005634(PANTHER)|GO:0005737(PANTHER)
Amtr02g06805 394 SUPERFAMILY CBS-domain pair 162 392 IPR046342 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr02g06805 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Amtr Amtr-Chr1:176458012 Amtr02g06805 Amtr-Chr2:123503236 dispersed
Amtr Amtr-Chr2:123503236 Amtr10g03552 Amtr-Chr10:83819721 dispersed
Amtr Amtr-Chr2:123503236 Amtr04g00125 Amtr-Chr4:2858318 transposed