AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr02g06818 ATGAGAGGAGTGATTGGGAAGTATCCATCAAGTGATGGAAATGGTGAAGTGGGCAGTGCAAATGGGATCATAAAAACCAACAGAAAATGCAGAGATATTGTGTTTCTTGTTTTTTTCATTGCCTTTTGGATCTCCATGATTGTTAACTCCAGCTTTGGCTTCAACCAAGGAAACCCATTGAGGCTAAACTTTGGGTTGGACTACAAAGGAAATGTATGTGGGGGCAAACACAAAGATTTTAATCTCCATGAGTTGGAACTCAAATATTATGTTAATCCGAATCAAGTCTACCAAAGCGGAGTAAAAAACAGTGGAGTAAAACTGTCTAACGCGCGAACAATATGTTTATTGGATTGCCCAACTCCGTCTGAAGATTCGTTGAACTGGGTCTGTGATTATCCAGAAGGAGATATCCATATTTCATTAGACGATTGGATTGATATGAATTATGATTATTTTGCTGACCTTACTCCAGAACTAAGAAACACTTCTCTTCAGCTTCAAGGTCCTTGTTATCCGGTTATTTTTCCAAGCGTAAACGTATATTGGACTTGCCAATTTATCGATCGGCTGTCAAACGTGTCGTTAACACATTGGAAGCAAATGAATGGGGTTACCATTGATGATAACATGGTTATAGATAAATCCATTCATAACTCCATTAATGCACGATCTTCAGTATTGAAGAGATATGTAGCTGATGTTGGAAAATCATGGCCAGTTTTGATTGTGTGTGGAGGACTCTTGCCTTTATTTTTATCATTGCTATGGCTTTTAATGATTCGACATTTTGTAGCTGCGATGCCATGGGTTACCGTGTTCTTCTTTAATGGCCTGATAATATCAGTCACAATGTTCTACTACTTGAAAGCTGGATGGATTGGAAATGATGCTATCTCGCCCATCATCGGTGAGCATGATCCATACTACCATGTTTCTGCAAGGGAGCAACATCATATCCGTGCAGCTGCGTTTCTCATGACTTGTGTTATGATTGTTGCTGTTTTATCATCTATAGCTATCGTTAGACGAATTCTTATGGCAACATCCGTACTCAAGGTTGCTGCAAAGGTGATTGGAGAAGTTCATGCTCTAATAATATTCCCGGTTGTACCATATTTAATCCTTGCAGTCTTTTACATGTTTTGGTTGGCGGCTACTCTTAATCTTTTTAGTTCGGGTCAAATAGCGCGCAATGATTGCAACACAAATTGTTGTGCGTATGATCTTAAAGCCAAACGGGTCAGTTGTGATGACTGCTGTGGTTATAGTATCCATTACACCCCTCACATAGGAGCTTCCATTCTATTCCACTTGTTTGGATGCTATTGGGCTACTCAGTTTATCATAGCGTGTTCGTCAACTGTGATTGCGGGTTCTGTGGCTTCATACTATTGGACTCGTGGGGAATCTTCGACGACTATTCCGTTTCTTCCCGTTGTTTCGTCAATGAAGCTACTGATACGCTATAGCCTTGGCTCTATGGCTATTGGTTCCTTGATTGTATCTTTTGTTGAGTCGACACGGTTTATACTTGAGGCCGTTCGACGGAGACTTAAAGTTGCTGACATCACGCCTGAAAACTGGTTTAAAAGAATGATGTTTTATACTTCTCGGGCTTGCTTGAAATGTATCGAATTGACCGTGAAATCTGTTAACCGCAATGCATACATTATGATTGCTATAACAGGAAAAGGGTTTTTTAGAGCTTCCGAAACGGCAACAGATTTGATAATTAGTAACATTCTCCGTATAGGCCGAGTGAACGTAATCGGGGACGTTATACTGTTTCTAGGAAAACTATGTGTGAGTCTTGCAAGTGCACTTTTCGGCTTTCTTATGTTGGATACTCATAAATACAAATCCTCTCACAACAAGATCACATCGCCGTTATTTCCAGTGCTGGTATGTTGGGGTTTAGGATACGTGGTAGCGACCCTTTTCTTTGCGGTGGTGGAAATGTCGATTGATACTATTATACTTTCGTATTGCCAGGATGCGGAGGAACATCAAGGGACCGCACATTATGCACCTCCGCTTTTGATTGAAACATTTGATGAACAAAATGAGGTGCAAAGAATTTCACAGTAA 2091 40.36 MRGVIGKYPSSDGNGEVGSANGIIKTNRKCRDIVFLVFFIAFWISMIVNSSFGFNQGNPLRLNFGLDYKGNVCGGKHKDFNLHELELKYYVNPNQVYQSGVKNSGVKLSNARTICLLDCPTPSEDSLNWVCDYPEGDIHISLDDWIDMNYDYFADLTPELRNTSLQLQGPCYPVIFPSVNVYWTCQFIDRLSNVSLTHWKQMNGVTIDDNMVIDKSIHNSINARSSVLKRYVADVGKSWPVLIVCGGLLPLFLSLLWLLMIRHFVAAMPWVTVFFFNGLIISVTMFYYLKAGWIGNDAISPIIGEHDPYYHVSAREQHHIRAAAFLMTCVMIVAVLSSIAIVRRILMATSVLKVAAKVIGEVHALIIFPVVPYLILAVFYMFWLAATLNLFSSGQIARNDCNTNCCAYDLKAKRVSCDDCCGYSIHYTPHIGASILFHLFGCYWATQFIIACSSTVIAGSVASYYWTRGESSTTIPFLPVVSSMKLLIRYSLGSMAIGSLIVSFVESTRFILEAVRRRLKVADITPENWFKRMMFYTSRACLKCIELTVKSVNRNAYIMIAITGKGFFRASETATDLIISNILRIGRVNVIGDVILFLGKLCVSLASALFGFLMLDTHKYKSSHNKITSPLFPVLVCWGLGYVVATLFFAVVEMSIDTIILSYCQDAEEHQGTAHYAPPLLIETFDEQNEVQRISQ 696
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr02g06818 696 Pfam Plasma-membrane choline transporter 326 668 IPR007603 GO:0022857(InterPro)|GO:0055085(InterPro)
Amtr02g06818 696 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 22 689 IPR007603 GO:0022857(InterPro)|GO:0055085(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr02g06818 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
359034 Amtr02g04140 Amtr02g06818
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Amtr Amtr-Chr1:138967912 Amtr02g06818 Amtr-Chr2:123700612 transposed
Amtr Amtr-Chr8:128087399 Amtr02g06818 Amtr-Chr2:123700612 transposed
Amtr Amtr-Chr2:82118130 Amtr02g06818 Amtr-Chr2:123700612 wgd