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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr02g06834 ATGGATAATATCACTTCACCACAACCCGACCCATCTCCGGCCAACTCTCCCTCCAGCAACGGCAGCACCACCACCACCACCACCCAAACACCACCACTCACTCCCCGACCCGTTTCAAGATCCGACCCATCTCCATACCCAACCACCTTCGTCCAAGCCGACACCACTTCCTTCAAACAAGTAGTCCAGATGCTTACCGGTTCTTCCAAACCCGACCCGGCTCCTTCCAAAACCTCCATCCCCCCGGTCAAAACCGGTCAACAGAAAAAATATAAACTCTACGAACGTCGTAACAGTCTCAAAAACGGGTTGATGATTAACCCATCTGTTCCTAAGTTTAATAACGGTCATGGGTCATCGCCACGTGTCCATGAACTGTTGTCTCCTAGCATTCTTGATTTTCCGGCACTTGTGCTAAGTCCGGTCACTCCGTTGATTGAAGATCCGTTTAATAAATCGTCACCGTCGATTTGTGGTAATAATAATATTAATAATAATAAGATGGAAGAGAAAGAAGAAGAAAGGGTAGTTTTGGAAAAAGGGTTTTATTTGCATCCGTTGACGCCACGTGGCACGGCGGAGCCACGGCTGTTGCCGCTTTTTCCGTTGACGTCGCCGCGGTTGTCGGAGAAGACTTCTTAA 642 48.6 MDNITSPQPDPSPANSPSSNGSTTTTTTQTPPLTPRPVSRSDPSPYPTTFVQADTTSFKQVVQMLTGSSKPDPAPSKTSIPPVKTGQQKKYKLYERRNSLKNGLMINPSVPKFNNGHGSSPRVHELLSPSILDFPALVLSPVTPLIEDPFNKSSPSICGNNNINNNKMEEKEEERVVLEKGFYLHPLTPRGTAEPRLLPLFPLTSPRLSEKTS 213
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr02g06834 213 PANTHER VQ MOTIF-CONTAINING PROTEIN 11-LIKE 23 207 IPR039611 -
Amtr02g06834 213 MobiDBLite consensus disorder prediction 43 85 - -
Amtr02g06834 213 MobiDBLite consensus disorder prediction 1 90 - -
Amtr02g06834 213 Pfam VQ motif 45 71 IPR008889 -
Amtr02g06834 213 MobiDBLite consensus disorder prediction 1 35 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr02g06834 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
11563 Amtr02g06834 Amtr07g01305
359033 Amtr02g04133 Amtr02g06834
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Amtr Amtr-Chr2:124051993 Amtr04g00139 Amtr-Chr4:2988372 dispersed
Amtr Amtr-Chr2:82045886 Amtr02g06834 Amtr-Chr2:124051993 wgd
Amtr Amtr-Chr2:124051993 Amtr07g01305 Amtr-Chr7:18179375 wgd