AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr02g06838 ATGGCCTCTTTTCACATATCTCTCTGCATTTTCTTTTTTGCTTTTATAACTTTAATATGTTTTTCCGATGCTAATACTTTTAATGTTGGCGGGAAAGATGGTTGGACGTTGCACCCTTCTGAAAGTTATAGTCAATGGTCAAGCAGGTTGAGGTTTCTCGTCAACGACATTCTCCATTTTAAGTATAATGGTGGGACGGATTCTGTATTGGAGGTGAGTAAAGGAGATTATGATAGCTGCAACGTGAATAGTCCGATCACTACACTTACTGGTGGAGATTCTACCTTTAGTTTGAACCGTCCTGGTCCTTTTTACTTTATTAGTGGTAATAAGTCTAATTGTGATCAGGGTCAGAAGTTGACGGTGGTTGTTATTACGCCTAGATCCGCGAAAACACCACCCGCTGTTGCTCCTACTCCGCCCGGTTCTCCACCGGGTAGTCCTGGGGGTAAACCGGGTGGAGGTGGATCGACTTCTCCACCAAGTGCTCCTGGTGGTTCACCTGGTGGTGGAGGCGGCTCGACTTCTCCTCCAGGTGCTCCTGGGGCGTCACCTGGTGGTGGAGGCGGCTCGACTTCCCCTCCAGGTGCTCCTGGAGCTTCACCTGGTGGTGGAGGTGGCTCCACTTCTCCCCCAGGTGCTCCCGGAGCCTCACCTGGTGGGGGAGGTGGCTCAACTTCTCCCCCAGGTGCTCCCGGAGCCTCACCTGGTGGTGGAGGCGGCTCAACTTCTCCTCCAGGTGCTCCTGGGGCCTCACCTGGAGGTGGTGGAGGGTCGTCGTCACCCCCAGGTGCACCCGGGGCCTCACCTGGTGGAGGAGGCGGCTCTTCTTCTCCCCCAAGTGCTCCCGGGGCGTCACCAGGTGGAGGCGGCTCCACTTCTCCACCTGGTGCTCCCGGGGCGTCACCGGGTGGAGGTGGCTCTACTTCTCCCAGCGGTAGTCCCATGGGTTCACCAGGTGGTGGAGGCGGCTCAACTTCTCCCACAGGTAGTCCCATGGGTTCACCTGGTGGTGGTGGAGGCGGCTCAACTTCTCCCACCGGTAGTCCCATGGGTTCACCTGGTGGTGGAGGCTCCTCTCCTATGGGTAGTCCTGCGGCTTCACCAGAAGGAGGCATGGGCACCTCATCTCCCACAGGTGGTCCCGCCGCTTCACCTGGTGCAGCCGGGGCTTCACCCACAGGTAATCCAGCAGATACACCAAGTGGAGCCGCGTCTTCTCCCACTGGTACCAATGGGAATCAAGGTGCGTCGGCAGCAAGACCAATAGTTAGTGCAATCTTGAGTGTGCCGGTTGCCGTGATAATAATGGTATTTATGTATTAG 1326 56.18 MASFHISLCIFFFAFITLICFSDANTFNVGGKDGWTLHPSESYSQWSSRLRFLVNDILHFKYNGGTDSVLEVSKGDYDSCNVNSPITTLTGGDSTFSLNRPGPFYFISGNKSNCDQGQKLTVVVITPRSAKTPPAVAPTPPGSPPGSPGGKPGGGGSTSPPSAPGGSPGGGGGSTSPPGAPGASPGGGGGSTSPPGAPGASPGGGGGSTSPPGAPGASPGGGGGSTSPPGAPGASPGGGGGSTSPPGAPGASPGGGGGSSSPPGAPGASPGGGGGSSSPPSAPGASPGGGGSTSPPGAPGASPGGGGSTSPSGSPMGSPGGGGGSTSPTGSPMGSPGGGGGGSTSPTGSPMGSPGGGGSSPMGSPAASPEGGMGTSSPTGGPAASPGAAGASPTGNPADTPSGAASSPTGTNGNQGASAARPIVSAILSVPVAVIIMVFMY 441
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr02g06838 441 Gene3D - 23 129 IPR008972 -
Amtr02g06838 441 PANTHER BLUE COPPER PROTEIN 15 160 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Amtr02g06838 441 ProSiteProfiles Phytocyanin domain profile. 25 126 IPR003245 GO:0009055(InterPro)
Amtr02g06838 441 MobiDBLite consensus disorder prediction 395 418 - -
Amtr02g06838 441 MobiDBLite consensus disorder prediction 305 354 - -
Amtr02g06838 441 Pfam Plastocyanin-like domain 35 118 IPR003245 GO:0009055(InterPro)
Amtr02g06838 441 SUPERFAMILY Cupredoxins 24 125 IPR008972 -
Amtr02g06838 441 MobiDBLite consensus disorder prediction 133 148 - -
Amtr02g06838 441 MobiDBLite consensus disorder prediction 131 418 - -
Amtr02g06838 441 CDD OsENODL1-like 26 125 IPR041846 -
Amtr02g06838 441 FunFam Early nodulin-like protein 1 24 129 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr02g06838 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
11565 Amtr02g06838 Amtr02g07879
11566 Amtr02g06838 Amtr07g01302
359032 Amtr02g04130 Amtr02g06838
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Amtr Amtr-Chr2:120068046 Amtr02g06838 Amtr-Chr2:124107192 dispersed
Amtr Amtr-Chr2:124107192 Amtr02g07879 Amtr-Chr2:146298375 dispersed
Amtr Amtr-Chr7:31220984 Amtr02g06838 Amtr-Chr2:124107192 transposed
Amtr Amtr-Chr2:82031273 Amtr02g06838 Amtr-Chr2:124107192 wgd
Amtr Amtr-Chr2:124107192 Amtr07g01302 Amtr-Chr7:18137379 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Amtr01g04079 . 7 201 PhytocyaNIN gene family AT1G08500 54.592 1.55e-67 206.0
Amtr01g06746 ACH 3 188 PhytocyaNIN gene family AT3G20570 44.624 1.05e-46 150.0
Amtr02g03001 WGDA 13 151 PhytocyaNIN gene family AT1G79800 37.762 1.41e-28 103.0
Amtr02g03697 WGDA 23 138 PhytocyaNIN gene family AT2G25060 50.0 1.10e-35 122.0
Amtr02g04130 ACH,WGDA 9 177 PhytocyaNIN gene family AT4G28365 43.931 1.76e-42 139.0
Amtr02g06644 . 13 174 PhytocyaNIN gene family AT3G20570 46.386 2.16e-46 149.0
Amtr02g06838 ACH,WGDA 1 279 PhytocyaNIN gene family AT4G27520 39.264 1.82e-44 157.0
Amtr02g07752 ACH 5 185 PhytocyaNIN gene family AT3G20570 42.211 1.52e-45 148.0
Amtr02g07879 ACH,WGDA 3 171 PhytocyaNIN gene family AT5G53870 47.753 5.26e-48 162.0
Amtr03g04744 . 10 129 PhytocyaNIN gene family AT1G48940 54.472 3.35e-47 150.0
Amtr03g05647 ACH 8 136 PhytocyaNIN gene family AT1G79800 43.411 7.65e-37 125.0
Amtr03g07327 . 7 159 PhytocyaNIN gene family AT5G15350 41.667 5.27e-40 132.0
Amtr04g03083 WGDA 8 168 PhytocyaNIN gene family AT5G15350 49.068 1.22e-57 176.0
Amtr05g03610 . 2 161 PhytocyaNIN gene family AT5G15350 40.854 8.87e-43 139.0
Amtr06g02382 . 20 126 PhytocyaNIN gene family AT4G12880 37.963 2.07e-19 80.1
Amtr06g04617 WGDA 19 136 PhytocyaNIN gene family AT1G17800 36.975 7.71e-20 77.4
Amtr07g00804 . 9 187 PhytocyaNIN gene family AT4G28365 41.624 1.26e-49 159.0
Amtr07g01302 ACH,WGDA 10 185 PhytocyaNIN gene family AT5G53870 51.337 1.93e-54 179.0
Amtr07g02194 . 33 160 PhytocyaNIN gene family AT1G64640 60.0 4.56e-48 153.0
Amtr07g04828 . 5 168 PhytocyaNIN gene family AT5G15350 46.988 2.44e-54 168.0
Amtr07g04830 WGDA 10 128 PhytocyaNIN gene family AT5G15350 46.341 4.69e-35 119.0
Amtr07g04833 . 12 131 PhytocyaNIN gene family AT2G27035 46.825 5.16e-39 129.0
Amtr10g00779 . 15 179 PhytocyaNIN gene family AT1G08500 42.941 2.61e-36 125.0
Amtr10g00896 . 63 133 PhytocyaNIN gene family AT5G53870 53.521 4.63e-20 85.5
Amtr11g03444 . 29 126 PhytocyaNIN gene family AT3G20570 38.0 2.18e-16 70.1
Amtr11g03594 WGDA 19 138 PhytocyaNIN gene family AT5G57920 50.0 1.22e-40 134.0
Amtr11g03844 WGDA 16 132 PhytocyaNIN gene family AT1G79800 44.444 9.15e-33 114.0