AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr02g06924 ATGGGTACGGTTCGATCCGAATCCCTCATGCGTTGGGTCTGGGAAGCTAACCGTGGAAACCCCGTTCGCGAAAACGCCACCCTCACATTCGGGACAGACGGCAACCTAGTCCTCGCGGATGCTGACGGACGTGTTGTCTGGCAAACGAATACCGCGAACAAAGTGGTCGGGTTTCAAGTGCTTCCAACTGGTAACATGGTTCTTCATGATGGTAAGGGTAATTACTTATGGCAAAGCTTTGATTCTCCTACGGACACTCTCTTGGTGGGTCAAACACTACGAGCTGGTGGTCCGAATAAGCTCGTGAGTCGGCTTTCGGAGGTGAGCAATGTTGATGGACCGTATAGTTTGGTTATGGAACCTAAAGGGTTATCCATGTATTACAAAAGTCCTAACTCGCCTCGACCAATGCTTTACTGGTCCTCTAGCGAATGGTTCACCATTGACCGAGGTAGTTTGAGTAATTTAACTCTTGTCTCGTCCCCAGATACGGATGAGGGGTTTCTATATTACTTGACGTTTGAATACTTTACCACAAACCCTACGTCATCGTCGAATCGCAACATGGCGTTTTCAAGATACAACAACACGCTATCGTATCTTCGATTAGGGATAGATGGAAACCTTAAGTTCTACACATATAACCCGAACGTGCAAGGTGTGGCGTGGGAGTTGGTGTACACCTTTCTCGATCGGGATTCAATGGAAGGTGAGTGCCAGTTACCGGGACGATGTGGGAACTTTGGGTTATGTGAGGACAGCCAATGTGTCGCGTGCCCGACGCCTAATGGGCTAACTGGGTGGAGCAAAGAGTGCGAGGTGAAAAAGGTGACATCTTGCAAAGCTAGCGACTTTGGGTACTACAAGCTTGAAGGGGTTGATCATTTTATGATCAAGTACACGAGGGGAGATCAGACCAAACAAAGCGATTGCGAGAGCAAATGCACGAAGGATTGCAAGTGTATGGGGTACTTCTATCACACGGATAATTCGAGGTGTTGGATCGCTTACGATTTGAAAACGTTAACAAGAGTTGGGAACTCGACTCATTTGGCGTACATTAAAACACCCAACAAGTAG 1080 47.69 MGTVRSESLMRWVWEANRGNPVRENATLTFGTDGNLVLADADGRVVWQTNTANKVVGFQVLPTGNMVLHDGKGNYLWQSFDSPTDTLLVGQTLRAGGPNKLVSRLSEVSNVDGPYSLVMEPKGLSMYYKSPNSPRPMLYWSSSEWFTIDRGSLSNLTLVSSPDTDEGFLYYLTFEYFTTNPTSSSNRNMAFSRYNNTLSYLRLGIDGNLKFYTYNPNVQGVAWELVYTFLDRDSMEGECQLPGRCGNFGLCEDSQCVACPTPNGLTGWSKECEVKKVTSCKASDFGYYKLEGVDHFMIKYTRGDQTKQSDCESKCTKDCKCMGYFYHTDNSRCWIAYDLKTLTRVGNSTHLAYIKTPNK 359
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr02g06924 359 CDD B-lectin 1 83 IPR001480 -
Amtr02g06924 359 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE-THREONINE-PROTEIN KINASE SD2-5 11 357 IPR051343 -
Amtr02g06924 359 SMART blect-4 1 83 IPR001480 -
Amtr02g06924 359 Pfam D-mannose binding lectin 13 94 IPR001480 -
Amtr02g06924 359 ProSiteProfiles Bulb-type lectin domain profile. 1 81 IPR001480 -
Amtr02g06924 359 Gene3D - 3 81 IPR036426 -
Amtr02g06924 359 CDD PAN-AP-plant 279 357 - -
Amtr02g06924 359 Pfam S-locus glycoprotein domain 158 264 IPR000858 GO:0048544(InterPro)
Amtr02g06924 359 SUPERFAMILY alpha-D-mannose-specific plant lectins 8 145 IPR036426 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr02g06924 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Amtr Amtr-Chr2:126128555 Amtr02g06935 Amtr-Chr2:126328637 dispersed
Amtr Amtr-Chr2:126128555 Amtr02g06925 Amtr-Chr2:126149580 tandem
Amtr Amtr-Chr2:126128555 Amtr09g03468 Amtr-Chr9:87864549 wgd
Amtr Amtr-Chr2:126128555 Amtr09g03435 Amtr-Chr9:87363257 wgd