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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr02g06952 ATGGGTTGCTCCGGTTCATCACTGAGTAAGCGAGAGCGAACGACGAAAAAGTTAAGAAAGCCGAAGCCGTGGGAGTTCCCACGGCCTGTTACGTGGAGTCAGTTGGTTCAGATGCGGGATGAGTTTTGGGATTCGGCTCCTCACCATGGTGGCAAGAAAGAAATATGGGATGCAATACATGCAGCAGCTGAAGCTAATATAGAACTTGCTCAAACAATATTAGATAGTGCAGGGGTCATTGTTCATAAGCCTGATATGACAGTTTGTTATGATGAAACAGGTACCAAATATAAAATACCAAGATATGTATTAAGTGAGCCAACAAACTTGATACAACTAAGTTGA 345 42.9 MGCSGSSLSKRERTTKKLRKPKPWEFPRPVTWSQLVQMRDEFWDSAPHHGGKKEIWDAIHAAAEANIELAQTILDSAGVIVHKPDMTVCYDETGTKYKIPRYVLSEPTNLIQLS 114
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr02g06952 114 Pfam Ubiquitin-binding domain 15 112 IPR032752 -
Amtr02g06952 114 PANTHER UBIQUITIN DOMAIN CONTAINING 1 PROTEIN-RELATED 1 111 IPR039869 -
Amtr02g06952 114 Gene3D - 31 104 IPR038169 -
Amtr02g06952 114 MobiDBLite consensus disorder prediction 1 24 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr02g06952 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
359024 Amtr02g04096 Amtr02g06952
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Amtr Amtr-Chr2:81571408 Amtr02g06952 Amtr-Chr2:126811002 dispersed
Amtr Amtr-Chr2:126811002 Amtr05g01410 Amtr-Chr5:23834586 dispersed