AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr02g08785 ATGGCAGCATCCGCCATGGACGGCGTCGCTGCGACGGCGCTCCGGTCTGTTCTTCAGCGCGTAAAACAAGCAGCTGAAAGATCAACTCGTTCATCTGATAAGATAACACTCGTTGCAGTCAGCAAAACAAAGCCTGTTTCACTCCTTAAAGAAGTGTACGACGCCGGTCACCGTTGTTTCGGTGAAAATTATGTTCAGGAAATCGTTGATAAATCTCCTCAGCTTCCTGAAGATATAGAGTGGCATTTTATTGGTAATTTGCAGAGCAATAAAGTGAAGCCGCTGTTAACTGGGGTACCAAATCTTGCCATGGTGGAGACTGTAGATGATGAAAAGATTGCAAATAATCTTGATCGAGTTATTGGGAACATTGGCAGGAAGCCTTTAAAAGTGTTGGTCCAGGTGAATACAAGTGGAGAAACATCCAAATTTGGAGTTGACCCCGATGGGTGCTTGGAGCTTGTTAAACATGTTACTTCAAACTGCCCAAACCTCGAGTTTTGTGGCTTAATGACAATTGGGATGCCAGACTATACATCAACTCCAGAGAACTTTAAGACATTAGCCAATTGCAGAACGGAGGTATGCAATGCTCTTGAAATACCGGAGGAGCAATGCGAACTGTCAATGGGCATGTCTGGTGACTTTGAGCTAGCGATTGAAATGGGCAGTACTAATGTGAGGGTCGGATCTACCATTTTCGGAGCAAGGGAGTACCCAAAGAAACAATGA 732 44.81 MAASAMDGVAATALRSVLQRVKQAAERSTRSSDKITLVAVSKTKPVSLLKEVYDAGHRCFGENYVQEIVDKSPQLPEDIEWHFIGNLQSNKVKPLLTGVPNLAMVETVDDEKIANNLDRVIGNIGRKPLKVLVQVNTSGETSKFGVDPDGCLELVKHVTSNCPNLEFCGLMTIGMPDYTSTPENFKTLANCRTEVCNALEIPEEQCELSMGMSGDFELAIEMGSTNVRVGSTIFGAREYPKKQ 243
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr02g08785 243 SUPERFAMILY PLP-binding barrel 12 235 IPR029066 -
Amtr02g08785 243 FunFam Pyridoxal phosphate homeostasis protein 2 243 - -
Amtr02g08785 243 Pfam Alanine racemase, N-terminal domain 24 237 IPR001608 -
Amtr02g08785 243 NCBIfam YggS family pyridoxal phosphate-dependent enzyme 14 237 IPR011078 GO:0030170(InterPro)
Amtr02g08785 243 PIRSF YBL036c-PLPDEIII 1 243 IPR011078 GO:0030170(InterPro)
Amtr02g08785 243 ProSitePatterns Uncharacterized protein family UPF0001 signature. 81 95 IPR011078 GO:0030170(InterPro)
Amtr02g08785 243 CDD PLPDE-III-YBL036c-euk 14 235 - -
Amtr02g08785 243 PANTHER PROLINE SYNTHETASE CO-TRANSCRIBED BACTERIAL HOMOLOG PROTEIN 7 240 IPR011078 GO:0005622(PANTHER)|GO:0030170(InterPro)|GO:0030170(PANTHER)
Amtr02g08785 243 Gene3D Alanine racemase 2 243 IPR029066 -
Amtr02g08785 243 Hamap Pyridoxal phosphate homeostasis protein. 12 236 IPR011078 GO:0030170(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr02g08785 K06997 PLP dependent protein
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Amtr Amtr-Chr2:170993331 Amtr06g04565 Amtr-Chr6:101304228 dispersed