AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr02g09130 ATGGCATCAATGGCCGGGTTACGTGGTTCCTCTCTAGCAGTCTTGGAAGGAAGTCTTCAGCTCAATGGCTCAACCCGTTTGACGCCTATTGGAAATGGTCGTGTTGGTGTTGCACGGACTGGGCTAGTTGTTAAAGCCCAACAGGGACAAGGCGAAAGCGAGACTAGCCGCAGAGCTGTGTTGGGACTCATTGCCACTGGACTAGCCTCGGGTTCTTTCGTTCAGGCTGTGCTTGCTGATGCTAAGCCTATCAAGCTCGGACCACCTCCCCCACCCTCTGGTGGTCTTCCCGGAACCCTAAACTCCGATGAAGCAAGGGACCTTGATTTGCCGTTAAAGAACCGGTTCTACCTCCAGCCATTGTCGCCATCGGAGGCTGCAGCTCGTGCAAAAGAATCAGCAAAAGAGATATTAAATGTTAAAGAGTTCATTGACAAAAAGGCATGGCCATATGTCCAGAACGACCTTCGTTTGAGGTCGGAATACCTTCGGTTCGACCTGAATACAGTCATTGCCGCTAAGCCAAAGGATGAGAAGAAACAACTCAAAGATCTTACCGGAAAGCTTTTCCAAAACATGGCAGATCTGGACTATGCGGCAAAGATCAAAAGCTCGGCTGATGCAGAGAAGAGTTACGCTGCAGCTGTGTCTAGTCTTAATGATGTTCTTTCGAAACTCGGCTAA 684 49.56 MASMAGLRGSSLAVLEGSLQLNGSTRLTPIGNGRVGVARTGLVVKAQQGQGESETSRRAVLGLIATGLASGSFVQAVLADAKPIKLGPPPPPSGGLPGTLNSDEARDLDLPLKNRFYLQPLSPSEAAARAKESAKEILNVKEFIDKKAWPYVQNDLRLRSEYLRFDLNTVIAAKPKDEKKQLKDLTGKLFQNMADLDYAAKIKSSADAEKSYAAAVSSLNDVLSKLG 227
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr02g09130 227 FunFam Oxygen-evolving enhancer protein 3 80 227 - -
Amtr02g09130 227 Pfam Oxygen evolving enhancer protein 3 1 227 IPR008797 GO:0005509(InterPro)|GO:0009523(InterPro)|GO:0009654(InterPro)|GO:0015979(InterPro)|GO:0019898(InterPro)
Amtr02g09130 227 Gene3D - 80 227 IPR023222 -
Amtr02g09130 227 MobiDBLite consensus disorder prediction 84 104 - -
Amtr02g09130 227 PANTHER OXYGEN-EVOLVING ENHANCER PROTEIN 3-1, CHLOROPLASTIC 40 226 IPR054099 GO:0009507(PANTHER)|GO:0009767(PANTHER)|GO:0045156(PANTHER)
Amtr02g09130 227 SUPERFAMILY Oxygen-evolving enhancer protein 3, 116 226 IPR023222 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr02g09130 K08901 photosystem II oxygen-evolving enhancer protein 3
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Amtr Amtr-Chr2:180994659 Amtr07g06098 Amtr-Chr7:128089353 dispersed