AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr06g04353 ATGGCTTCTTCTTCTTCCAGTTTAATCCTCGTCTTCTATGCTCTACTGCTTATACAGTGTTGTTGCTATGGTCGGGAAATCGTAGACAAGGACCAAAAGATCGATCGCAACGAAGAAAATCATATTAATATATACGGGAAGAACAATATAAATGATTTGGATCCGGCTCTAAACGTGTTCTTCCACGTAACAGATTTATATTCGGGCAAAAAAATGCCTATTTATTTCGCGGTGAATGATCCTTCAACAACTCCTCGGTTATTAACACGAGAACAATCCGATTCGATACCATTTTCGTCGTCAAAACTTGCGTATCTTCTCGAACTCATATCATTATCCAAAGGTTCACCACAAGCCTTAGCCATGGAACAAACACTCAAACAGTGTGAGCTTGAGGCCACACCGGGTGAGACACGGTTTTGTGCTAGCTCATTAGAGTCCATGTTGGATATGACACGTGGCATAATGGGTATGGTTAAACTAAAGGTGTTAACATCCAATATTCATAATTTGTCAAACACCCTTTTGCAAGAGTATACTTTTGTAAAGGAGCCATTGGAAATTAATGTTTCTAATATGGTGGCTTGTCACACTATGGCATATCCTTATGCGGTTTACTATTGTCATGGTCATAAGGGGTATAATAGGGTTTTTGAGATTTCTTTAGGGGGTGAAAATGGAAATATAGTTGATGCTATCGCGGTCTGCCACATGGACACTTCTAAGTGGGATAGTGATCACGTAGCGTTTCGTGTTCTCGGAGGCCAGCCTGGCAGCTCGCCGGTGTGCCATTTTCTACCTGCTGATAATATTGTGTGGATACCATCACTATAA 834 41.01 MASSSSSLILVFYALLLIQCCCYGREIVDKDQKIDRNEENHINIYGKNNINDLDPALNVFFHVTDLYSGKKMPIYFAVNDPSTTPRLLTREQSDSIPFSSSKLAYLLELISLSKGSPQALAMEQTLKQCELEATPGETRFCASSLESMLDMTRGIMGMVKLKVLTSNIHNLSNTLLQEYTFVKEPLEINVSNMVACHTMAYPYAVYYCHGHKGYNRVFEISLGGENGNIVDAIAVCHMDTSKWDSDHVAFRVLGGQPGSSPVCHFLPADNIVWIPSL 277
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr06g04353 277 Pfam BURP domain 59 274 IPR004873 -
Amtr06g04353 277 ProSiteProfiles BURP domain profile. 60 276 IPR004873 -
Amtr06g04353 277 SMART BURP-2 58 276 IPR004873 -
Amtr06g04353 277 PANTHER BURP DOMAIN PROTEIN USPL1-LIKE 43 276 IPR044816 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr06g04353 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
12998 Amtr06g04353 Amtr07g01050
358172 Amtr01g04219 Amtr06g04353
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Amtr Amtr-Chr1:113936551 Amtr06g04353 Amtr-Chr6:96673667 dispersed
Amtr Amtr-Chr6:96673667 Amtr07g01051 Amtr-Chr7:14460465 dispersed
Amtr Amtr-Chr1:113602356 Amtr06g04353 Amtr-Chr6:96673667 wgd