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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr06g04386 ATGGCCACTCTATCTCCTATCACCTTCACCACCACCACCACCACCATTAGGTCCACTACTGCCAACACACCCAAAGTAACCTACATCAAGGGCCTCAACTCATTCAATGGACTTAAAGCCCACACCACCATGGCCTCATTGGGTACACCTGTTTCAACTGAACAACAATTTGCCAACTTTGTTTGCTCATTGAACAAACCATCAGCTCGTGGTGGAGCACTCACTGCCACGTGTAATGCGGTTGGAGAGATATTTAAGATAGCGGCTATCATGAATGCGATCACTCTTGTTGGTGTTGCTATTGGGTTTGTGCTTCTACGTATTGAAGCTTCTGTTGAAGAATCAGAGTAA 351 45.87 MATLSPITFTTTTTTIRSTTANTPKVTYIKGLNSFNGLKAHTTMASLGTPVSTEQQFANFVCSLNKPSARGGALTATCNAVGEIFKIAAIMNAITLVGVAIGFVLLRIEASVEESE 116
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr06g04386 116 SUPERFAMILY PetM subunit of the cytochrome b6f complex 81 113 - -
Amtr06g04386 116 Pfam PetM family of cytochrome b6f complex subunit 7 82 109 IPR012595 GO:0009512(InterPro)
Amtr06g04386 116 PANTHER B6F COMPLEX SUBUNIT, PUTATIVE, EXPRESSED-RELATED 2 116 IPR053333 -
Amtr06g04386 116 Hamap Cytochrome b6-f complex subunit 7 [petM]. 80 112 IPR012595 GO:0009512(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr06g04386 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
358184 Amtr01g04346 Amtr06g04386
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Amtr Amtr-Chr1:117311358 Amtr06g04386 Amtr-Chr6:97359391 wgd